Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_E24
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    80   1e-15
Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p...    29   2.6  

>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 32/64 (50%), Positives = 46/64 (71%)
 Frame = +3

Query: 111 MXLWTSAHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSKWFF 290
           M +W+S H F+H WETVAQAA+RKYPNP+N ++ G DVV++ +  G + T R++ S +  
Sbjct: 1   MRIWSSEHIFDHEWETVAQAAFRKYPNPLNRSITGIDVVKQTLEAGKILTERIIQSHFSI 60

Query: 291 PRWA 302
           P WA
Sbjct: 61  PSWA 64



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 37/108 (34%), Positives = 59/108 (54%)
 Frame = +2

Query: 410 TLLIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQ 589
           T L G +   Y+ E + ++P +++ +L T NL    ++ VDE + YTP   D +KT+LKQ
Sbjct: 65  TKLTGFSGTQYSHEYTVIDPTRKEFSLTTRNLNGSSFLRVDEKLTYTPAHEDPNKTILKQ 124

Query: 590 EAVVTVQGVPLSSYMEDLLTNKISLNAGKGRQAIXWVIGKFDTEIKEL 733
           + +VT+     + Y E    +  S NA KGRQ + WVI     E + +
Sbjct: 125 DVIVTITLPAFADYCEKTFLSIYSQNANKGRQGVEWVIDHLKKEYEAI 172


>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +3

Query: 111 MXLWTSAHT-FNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLV 272
           M LW S +T F + ++ VA A W +YPN     +I  DV+ER++ D  + T +L+
Sbjct: 1   MKLWDSPNTSFPYSFDEVASAFWDRYPNSHAKHIISEDVLERQITDNTIVTKKLI 55


>AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical
           protein Y39E4B.2 protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 182 FSPCCLSNCFPWMVECVC 129
           F+ C L +C P+M ECVC
Sbjct: 63  FNECLLVHCLPYMEECVC 80


>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
           protein F45G2.2a protein.
          Length = 1235

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 410 TLLIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVR 544
           T+  GT K    +E+ E+NP + + T   +NLTF +  +V   +R
Sbjct: 62  TMPDGTPKKLTRAEVQEINPAKFEKTEDMSNLTFLNEASVLHNLR 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,122,400
Number of Sequences: 27780
Number of extensions: 370842
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)