Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_E23
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    88   4e-19
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    83   1e-17
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    30   0.094
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.2  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    24   8.2  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 87.8 bits (208), Expect = 4e-19
 Identities = 44/70 (62%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
 Frame = +1

Query: 61  MPREIKXIKAFLIKARRKAAKSVKIKKHP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 237
           MPR+I  IK FL  ARRK A S +IKK+  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 238 LPPGLQVKEV 267
           LPP L V EV
Sbjct: 61  LPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 83.0 bits (196), Expect = 1e-17
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
 Frame = +1

Query: 61  MPREIKXIKAFLIKARRKAAKSVKIKKHPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 237
           MPR++  IK FL  A R  A S ++KK+    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 238 LPPGLQVKEV 267
           LPP L V EV
Sbjct: 61  LPPALTVTEV 70


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 30.3 bits (65), Expect = 0.094
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +1

Query: 103 ARRKAAKSVKI-KKHPENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 270
           A+    KS+ + +  P+  K K +      T+VITD+E  ++  +KQ +P  +Q  EVK
Sbjct: 194 AKHFGYKSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 155 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 286
           S S +      TP SS       N   +YL ++ LKK   V RL
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 119 PNRSK*RSTLRMSSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKL 259
           PNR+   + +  + SRF  Q  C P     K  +R++    L V+ L
Sbjct: 41  PNRAIGYAQIECACSRFGLQDKCKPIYGGCKNGVRSIPIQLLDVAGL 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,101,090
Number of Sequences: 5004
Number of extensions: 18250
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)