Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_E23
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     96   8e-21
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     94   3e-20
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    92   1e-19
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424...    28   2.5  
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344...    27   5.9  
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123...    27   5.9  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 95.9 bits (228), Expect = 8e-21
 Identities = 45/69 (65%), Positives = 56/69 (81%)
 Frame = +1

Query: 61  MPREIKXIKAFLIKARRKAAKSVKIKKHPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 240
           MP++I  IK FL+ ARRK A+SV+IK+  + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60

Query: 241 PPGLQVKEV 267
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 94.3 bits (224), Expect = 3e-20
 Identities = 44/69 (63%), Positives = 56/69 (81%)
 Frame = +1

Query: 61  MPREIKXIKAFLIKARRKAAKSVKIKKHPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 240
           MP++I  IK FL+ ARRK A+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 241 PPGLQVKEV 267
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 92.3 bits (219), Expect = 1e-19
 Identities = 43/68 (63%), Positives = 55/68 (80%)
 Frame = +1

Query: 64  PREIKXIKAFLIKARRKAAKSVKIKKHPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 243
           P++I  IK FL+ ARRK A+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91

Query: 244 PGLQVKEV 267
           PGL V+EV
Sbjct: 92  PGLTVQEV 99


>06_01_0590 -
           4240260-4240883,4241063-4242238,4242691-4242760,
           4243739-4243803
          Length = 644

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +1

Query: 4   PADAFGPFDSAG*KLFVFNMPREIKXIKAFLIKARRKAAKSVKIKKHPENVKFKVRCSRF 183
           P+D     + A   L  F +  +   ++  +I+A +     V I   P  VK    C++F
Sbjct: 29  PSDIVIHVEEARFYLHKFPLLSKSSLLQRLIIEASQNGTDEVYIHDIPGGVKIFEICAKF 88

Query: 184 LYTLVIT 204
            Y +V+T
Sbjct: 89  CYGMVVT 95


>12_02_1211 -
           27033927-27034029,27034130-27034273,27034358-27034439,
           27034536-27034690,27034865-27034945,27035397-27035458,
           27035966-27036034,27036807-27036867,27037560-27037816
          Length = 337

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 44  NSSSSTCRVKSKXSKPF*LRRGGKPPNRSK*RSTLRMSSSRFDAQGSCTP 193
           +SSSS+    +  S P    R   PP+  +    LR +SS   +QGS +P
Sbjct: 30  SSSSSSSTTTAAASLPL---RAAVPPSSGRRIPPLRCASSSSSSQGSASP 76


>05_01_0178 -
           1235546-1235756,1235869-1235945,1236194-1236347,
           1237067-1237216,1237363-1237484,1237806-1237910,
           1237986-1238213
          Length = 348

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +1

Query: 61  MPREIKXIKAFLIKARRKAAKSVKIKKHPENVKFKVRCSRFLYTLVITDKEKAE 222
           MP +   +   L+  + +   +V ++    N + +V C ++L+  +I++K  AE
Sbjct: 170 MPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAE 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,351,123
Number of Sequences: 37544
Number of extensions: 119541
Number of successful extensions: 282
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)