Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_E23
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...   115   1e-26
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    33   0.079
U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    26   9.1  
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    26   9.1  
AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score =  115 bits (276), Expect = 1e-26
 Identities = 53/70 (75%), Positives = 62/70 (88%)
 Frame = +1

Query: 61  MPREIKXIKAFLIKARRKAAKSVKIKKHPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 240
           MP+EIK IK FL+KARRK AKSVKIKK+  N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60

Query: 241 PPGLQVKEVK 270
           PPG+QVKE+K
Sbjct: 61  PPGIQVKELK 70


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 32.7 bits (71), Expect = 0.079
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 110 GKPPNRSK*RSTLRMSSSRFDAQGSCTPWSSLTKRRLRN 226
           G+P NR++   T+  S+S+  A  S  P+SS+T  R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232


>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 187 YTLVITDKEKAEKLKQSLPPGLQVKEVK 270
           +T V+  K   EKL +  P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 187 YTLVITDKEKAEKLKQSLPPGLQVKEVK 270
           +T V+  K   EKL +  P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420


>AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical
           protein F52C6.11 protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 52  VFNMPREIKXIKAFLIKARRKAAK-SVKIKKHPENVKFKVRCSRFLYTL 195
           +++MP  IK  + FL+ +  K+ K  +K+ K  +    K  C   + TL
Sbjct: 226 LYDMPFPIKRCEEFLVDSSEKSTKEKLKVAKKYQLENLKASCLAKINTL 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,159,975
Number of Sequences: 27780
Number of extensions: 101601
Number of successful extensions: 290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)