Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_E16
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 192 2e-50
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 192 3e-50
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 0.64
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 3.4
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 4.5
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 6.0
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 7.9
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.9
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 7.9
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 7.9
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 192 bits (469), Expect = 2e-50
Identities = 92/143 (64%), Positives = 106/143 (74%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 FARRFRTHGTXPLSTYMKVYKVGXIVXIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 276
F R FR HG LSTY+K YKVG IV I+ NGAVQKGMPHK YHGKTG VYNVT ++GV
Sbjct: 15 FQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGV 74
Query: 277 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 456
++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAP
Sbjct: 75 LIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAP 134
Query: 457 PKAAHIVS-GTEKPVLLAPIPYE 522
P AH VS +PV L P+ Y+
Sbjct: 135 PATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 192 bits (468), Expect = 3e-50
Identities = 92/143 (64%), Positives = 106/143 (74%), Gaps = 1/143 (0%)
Frame = +1
Query: 97 FARRFRTHGTXPLSTYMKVYKVGXIVXIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 276
F R FR HG LSTY+K YKVG IV I+ NGAVQKGMPHK YHGKTG VYNVT ++GV
Sbjct: 15 FQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGV 74
Query: 277 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 456
++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAP
Sbjct: 75 LIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAP 134
Query: 457 PKAAHIVS-GTEKPVLLAPIPYE 522
P AH VS +PV L P+ Y+
Sbjct: 135 PAKAHFVSTENNEPVTLHPVAYD 157
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 0.64
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -2
Query: 495 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 331
GF S+T SF+G W+ L + + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 330 TDIDALRYN 304
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.2 bits (55), Expect = 3.4
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -2
Query: 426 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 262
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/41 (29%), Positives = 15/41 (36%)
Frame = +3
Query: 135 LHVHESVQSWXHCXHQRQWCSSKGYATQSIPWKDRSRVQRY 257
L H SW R+ C +KGY PW + Y
Sbjct: 202 LDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDAY 242
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 321 DALRYNPSANTLVDNHTES 265
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 352 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 447
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 406 EAKAAGKTVNLKRQPAPPKAAHIVSGT 486
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +3
Query: 141 VHESVQSWXHCXHQRQWCSSKGYA---TQSIPWKDRSRVQRYCSCS 269
+ E S HC R WCSS A TQ + V +Y S S
Sbjct: 19 IEEPKLSCCHCETCRIWCSSPFMAFSCTQKPSVSENENVGKYASSS 64
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 7.9
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 314 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 493
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T +
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 494 P 496
P
Sbjct: 115 P 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,873
Number of Sequences: 5004
Number of extensions: 42010
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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