Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_E16
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 160 8e-40
03_01_0290 + 2246791-2247027,2248089-2248346 158 3e-39
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879... 31 0.50
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 31 0.87
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 30 1.1
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 30 1.5
01_06_1794 - 39919363-39920025 29 2.0
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 29 2.7
09_01_0142 - 2103224-2103864,2104264-2104399 29 2.7
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 29 2.7
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 3.5
01_01_0981 + 7766025-7766753 29 3.5
09_06_0224 + 21661317-21661386,21663735-21663865,21663904-216639... 28 4.6
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 4.6
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 4.6
01_01_0990 + 7847066-7847478,7847713-7848679 28 4.6
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 28 6.1
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 28 6.1
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 28 6.1
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 6.1
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 28 6.1
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 27 8.1
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 8.1
01_05_0421 + 21990034-21990392,21991691-21992681 27 8.1
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 160 bits (388), Expect = 8e-40
Identities = 75/145 (51%), Positives = 102/145 (70%)
Frame = +1
Query: 94 LFARRFRTHGTXPLSTYMKVYKVGXIVXIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 273
LFAR FR G PL+TY++ YK+G V ++ NGAV KGMPHK YHG+TGRV+NVT A+G
Sbjct: 14 LFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIG 73
Query: 274 VIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPA 453
V +NK+V RII KRI++RVEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP
Sbjct: 74 VEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQ 133
Query: 454 PPKAAHIVSGTEKPVLLAPIPYEFV 528
PK +V G + PIPY+ V
Sbjct: 134 GPKPGFMVEGATLET-VTPIPYDVV 157
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 158 bits (384), Expect = 3e-39
Identities = 74/145 (51%), Positives = 101/145 (69%)
Frame = +1
Query: 94 LFARRFRTHGTXPLSTYMKVYKVGXIVXIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 273
LFAR FR G PL+TY++ YK+G V ++ NGAV KGMPHK YHG+TGRV+NVT A+G
Sbjct: 14 LFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIG 73
Query: 274 VIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPA 453
V +NK+V RII KRI++RVEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP
Sbjct: 74 VEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPE 133
Query: 454 PPKAAHIVSGTEKPVLLAPIPYEFV 528
PK +V G + PIPY+ V
Sbjct: 134 GPKPGFMVEGATLET-VTPIPYDVV 157
>04_04_0823 +
28383798-28383864,28384475-28384877,28387388-28387932,
28387978-28388594
Length = 543
Score = 31.5 bits (68), Expect = 0.50
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC*ACQ 344
+++W C SK YA QS WK S++ C RCDC SR+D H+ C A
Sbjct: 117 EKKWKCDKCSKRYAVQS-DWKAHSKI---CGTREYRCDCGTLFSRRDSFITHRAFCDA-- 170
Query: 345 ALQVQTRLP 371
Q +RLP
Sbjct: 171 LAQESSRLP 179
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 30.7 bits (66), Expect = 0.87
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Frame = +3
Query: 42 QGSNLPHSKGYRRGT----RVLVRSQV--PHTWNXSALHVHESVQSWXHCXH-QRQW-CS 197
+G NLP R T +V V ++ PH AL ++ H +++W C
Sbjct: 86 RGHNLPWKLKQRSSTEAKKKVYVCPEITCPHHDATRALGDLTGIKKHYSRKHGEKKWKCD 145
Query: 198 --SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
SK YA QS WK +++ C RCDC SRKD H+ C
Sbjct: 146 RCSKKYAVQS-DWKAHTKI---CGTKEYRCDCGTIFSRKDSFITHRAFC 190
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 30.3 bits (65), Expect = 1.1
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 235 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 414
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 409 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 462
Query: 415 AAGKTVNLKRQPAP-PKAAHIVSGTEKPVLLAPI 513
+Q +P P + IVS + P +API
Sbjct: 463 GGTLLRQHPQQVSPAPGRSTIVSSSNAP-RIAPI 495
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 29.9 bits (64), Expect = 1.5
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC*ACQ 344
+++W C SK YA QS WK ++ C RCDC SR+D H+ C A
Sbjct: 121 EKKWKCDKCSKKYAVQS-DWKAHTKT---CGSREYRCDCGTLFSRRDSFITHRAFCDALA 176
Query: 345 ALQVQTRLP*ESQRE*EATEGSQGCRQDRQP 437
+ R + + T S G + P
Sbjct: 177 EESAKARAAPPPPADEDGTSASAGAPPPQAP 207
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 376 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 513
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC*ACQ 344
+++W C SK YA QS WK S+ C RCDC SR+D H+ C A
Sbjct: 121 EKKWRCDKCSKRYAVQS-DWKAHSKT---CGTREYRCDCGTLFSRRDSFITHRAFCDA-- 174
Query: 345 ALQVQTRLP 371
Q R+P
Sbjct: 175 LAQENARMP 183
>09_01_0142 - 2103224-2103864,2104264-2104399
Length = 258
Score = 29.1 bits (62), Expect = 2.7
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 235 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 414
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 124 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 177
Query: 415 AAGKTVNLKRQPAP-PKAAHIVSGTEKPVLLAPI 513
+ +Q +P P +VS + P +API
Sbjct: 178 GSMLLRQHPQQVSPAPGRPTVVSSSNAP-RIAPI 210
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 67 RVTAA-APGXLFARRFRTHGTXPLSTYMKVYKVGXIVXIRGNGAVQKGMPHKVYHGKTGR 243
++TA APG + F T G P Y+ G + + +G + G PHK+ R
Sbjct: 95 KITADDAPGETWHMVFSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------R 141
Query: 244 VYNVTAHALG 273
+Y++ + ALG
Sbjct: 142 LYSIASSALG 151
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 162 WXHCXHQRQWCSSKGYATQSIPWKDRSRV 248
W H QW YAT+ I W+ R+ V
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALV 563
>01_01_0981 + 7766025-7766753
Length = 242
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +3
Query: 207 YATQSIPWKDRS---RVQRYC-SCSRCDCQQACSRKDYTEAHQY 326
+A Q +P +D + R RYC SC+R C CS H +
Sbjct: 13 FAKQRLPLEDLTQTCRRDRYCVSCARAFCSHCCSSHHLWPGHHH 56
>09_06_0224 +
21661317-21661386,21663735-21663865,21663904-21663983,
21664248-21664372,21664745-21664830,21664932-21665168,
21665261-21665380,21665502-21665602,21665655-21665758,
21665851-21666047
Length = 416
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 9 RCFLSPSSF-VTQGSNLPHSKGYRRG 83
RC+ S S F + Q SNL SKGY +G
Sbjct: 28 RCYWSFSRFWLQQNSNLKRSKGYEQG 53
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 403 KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 531
++A AA + L+ + A G E+P L P+PYE+ A
Sbjct: 77 RKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPYEYPA 119
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +3
Query: 162 WXHCXHQRQWCSSKGYATQSIPWKDRSRV 248
W H H QW YA++ W+ R V
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLV 558
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C SK YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 98 EKKWKCDKCSKRYAVQS-DWKAHSKT---CGTREYRCDCGTLFSRRDSFITHRAFC 149
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 410 PRLPARPST*RDSQLPLKLPTSSVELRNPSYLRLSH 517
P L RP R P+ PT + +++ PS+L L H
Sbjct: 347 PNLQERPMDRRPELGPMPFPTQAWQMQAPSHLPLLH 382
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 249 QRYCSCSRCDCQQACSRKDYTEAHQYPC 332
Q C C C C + RKD A +Y C
Sbjct: 391 QDTCGCMMCKCIYSDQRKDIVLADKYTC 418
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 156 QSWXHCXHQRQWCSSKG 206
QSW +C +WC +KG
Sbjct: 255 QSWGNCVSVEEWCKNKG 271
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 340 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 447
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C SK YA S WK S+V C RCDC SR+D H+ C
Sbjct: 148 EKKWKCDKCSKRYAVHS-DWKAHSKV---CGTREYRCDCGTLFSRRDSFITHRAFC 199
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 205 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKC 357
G P G T VY+V AH+ GVIV+ + I V+ ++H C
Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVSGSEDRSAKIWKDGICVQSIEHPGC 187
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 305 LYRSASISVLSMSSTPSADKTSLRESKRM 391
+Y+SA++ V + SS P+ADK + + ++M
Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 27.5 bits (58), Expect = 8.1
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Frame = +3
Query: 42 QGSNLPHSKGYRRGTRVLVRSQVPHTWNXSALHVHES--------VQSWXHCXH-QRQW- 191
+G NLP K +RG++ VR +V S +H S ++ H +++W
Sbjct: 26 RGHNLPW-KLKQRGSKEAVRKKVYICPEASCVHHDPSRALGDLTGIKKHFFRKHGEKKWK 84
Query: 192 CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
C SK YA S WK S++ C +CDC SR+D H+ C
Sbjct: 85 CDKCSKKYAVHS-DWKAHSKI---CGTREYKCDCGTIFSRRDSFITHRAFC 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,296
Number of Sequences: 37544
Number of extensions: 308674
Number of successful extensions: 969
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -