Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_E13
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    85   2e-17
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    32   0.11 
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    27   3.2  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    26   5.6  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    25   9.8  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 7/162 (4%)
 Frame = +1

Query: 307 GTTDAPKGVQRPCGH----AATLCWSMKKVYGLQRGVWWAASDLGWVVGHSYICYGPLLA 474
           G+T  PKGV    G     AA  C  +  ++   R     A D+GW+ GH+YI YGPL+ 
Sbjct: 275 GSTGKPKGVVHCTGGYLLGAAATCKYVFDLHPTDR--MGCAGDVGWITGHTYIVYGPLML 332

Query: 475 GMTSVLYEGKPDRTPDPGQYFRIIEQHRVNALFTIPTAFRVLKRADPNAKYARRYCQKSL 654
           G  ++++E  P   PD  +Y+ ++E+HR+   +  PTA R+L+RA        ++ + SL
Sbjct: 333 GAATLVFESTP-AYPDYSRYWSVVERHRLTQWYIAPTAIRLLQRA---GNEFVKHDRSSL 388

Query: 655 KTVFIAGEHCDQDTRQWAERXFG---VPXLNHWWQTESGSPI 771
           + +   GE    ++  W     G       + +WQTE+GS I
Sbjct: 389 RVLGSVGEPIAPESFMWYYEVVGEKRCAVADTYWQTETGSHI 430


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = +1

Query: 550 QHRVNALFTIPTAFRVLKRADPNAKYARRYCQKSLKTVFIAGEHCDQDTRQWAERXF 720
           Q R+N   T PTA R L+    +AKY       S  T   A    D++TR+W  R F
Sbjct: 173 QARINLHGTNPTAGRSLRGWAIDAKYVAENIHSSASTWCFA----DEETRKWVSRLF 225


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 350 TQPRSAGP*KRCMVSNEECGGRRQTWAGWSVIRT 451
           +Q R +GP K  +V N++C    ++W  W V+ T
Sbjct: 36  SQQRGSGPRKGKVVMNKDC----RSWEDWKVLAT 65


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -3

Query: 677 SPAMKTVFSDFWQYLLAYLALGSARFSTLNAVGIVNRAFTRCCS 546
           S  M   F D W     +  +G A  S L      N A TRC +
Sbjct: 526 SSGMDPTFLDLWDVKTLFHEMGHAMHSILGHTKYQNLAGTRCAT 569


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 544 IEQHRVNALFTIPTAFRVLKRADPNAKYARRYCQKSLKTV 663
           I  H++    TIP    +L  +D    YA+    KSLKT+
Sbjct: 132 INLHKLEKCLTIPLDQNILLVSDTRWYYAQDSILKSLKTL 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,763
Number of Sequences: 5004
Number of extensions: 58746
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)