Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_E13
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0049 + 19238794-19239003,19239359-19239505,19239595-192397... 104 1e-22
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 56 3e-08
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216... 34 0.12
03_05_0244 - 22295105-22295389 30 2.5
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 29 3.4
01_01_0593 + 4416283-4417403,4417516-4417927 29 3.4
02_01_0130 - 938530-939990 29 4.4
11_06_0452 + 23774378-23775054,23775228-23775411,23775911-237759... 29 5.9
05_06_0221 + 26507795-26508937 29 5.9
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 28 7.8
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 28 7.8
>02_04_0049 +
19238794-19239003,19239359-19239505,19239595-19239750,
19239870-19239992,19240073-19240241,19240700-19240782,
19240917-19241018,19241104-19241192,19241317-19241407,
19241734-19241847,19242371-19242447,19242534-19242612,
19242710-19242778,19243022-19243197,19243309-19243365,
19243460-19243550,19243644-19243742,19243878-19244063
Length = 705
Score = 104 bits (249), Expect = 1e-22
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 5/166 (3%)
Frame = +1
Query: 307 GTTDAPKGVQRPCG-HAATLCWSMKKVYGLQRG-VWWAASDLGWVVGHSYICYGPLLAGM 480
G+T PKGV G + + K + + ++W +D GW+ GHSY+ YGPLL G
Sbjct: 324 GSTGKPKGVLHTTGGYMVYSATTFKYAFDYKPSDIYWCTADCGWITGHSYVTYGPLLNGA 383
Query: 481 TSVLYEGKPDRTPDPGQYFRIIEQHRVNALFTIPTAFRVLKRADPNAKYARRYCQKSLKT 660
T +++EG P+ PD G+ + I+++++V +T PT R L R +Y R+ +KSL+
Sbjct: 384 TVLVFEGTPN-YPDSGRCWDIVDKYKVTIFYTAPTLVRSLMR--DGTEYVTRHSRKSLRV 440
Query: 661 VFIAGEHCDQDTRQWAERXFG---VPXLNHWWQTESGSPITAPCLG 789
+ GE + +W G P + WWQTE+G + P G
Sbjct: 441 LGSVGEPINPSAWRWFYNIVGDSRCPISDTWWQTETGGFMITPLPG 486
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 56.4 bits (130), Expect = 3e-08
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Frame = +1
Query: 499 GKPDRT--PDPGQYFRIIEQHRVNALFTIPTAFRVLKRADPNAKYARRYCQKSLKTVFIA 672
GKP PDP + + +++++ V +T PT R L R +Y RY +KSL+ +
Sbjct: 477 GKPKAPNYPDPSRCWDVVDKYGVTIFYTAPTLIRALMR--DGTEYVTRYSRKSLRVLGSV 534
Query: 673 GEHCDQDTRQWAERXFG---VPXLNHWWQTESGSPITAPCLG 789
GE + +W G P + WWQTE+G + P G
Sbjct: 535 GEPINPTAWRWFYDIIGDARCPISDTWWQTETGGFMITPLPG 576
>12_02_0364 -
18020249-18020737,18021075-18021502,18021563-18021649,
18022059-18022192,18023051-18023053,18023129-18023187,
18023429-18023887
Length = 552
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -3
Query: 629 AYLALGSARFSTLNAVGIVNRAFTRCCSIILKYCPGSGVRSGFPSYRTEVIP 474
AY +LGS+ FSTLNA+GI+ AF + P G+ + ++ + IP
Sbjct: 358 AYTSLGSSLFSTLNALGIIAFAFRGHNLALEIQVPQGGMLTALYAFHSHDIP 409
>03_05_0244 - 22295105-22295389
Length = 94
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 341 PAATQPRSAGP*KRCMVSNEECGGRRQTWAGWS 439
P AT R+AGP + S E+ GG +Q W +S
Sbjct: 54 PMATTERTAGPPRSGSDSGEDHGGHQQRWQPFS 86
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 180 GTTPEYEKAQQRSLNDPSSNPRTPNRRVVEAIVDDSTSAVSVRYN*RPKRSPTSLR 347
G + E QQ ND PR + + + + T +S R N R +R+P + R
Sbjct: 344 GQMDDNEAEQQLRRNDGEKRPRRSGEKFSDDLDEQGTDMLSGRCNIRAQRTPLTSR 399
>01_01_0593 + 4416283-4417403,4417516-4417927
Length = 510
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 564 VYTMLLYYPEILSRIWCTIWFSFIQ 490
++T +L YPEI I C WFS +
Sbjct: 4 LWTFILLYPEIFLAIICFFWFSLFR 28
>02_01_0130 - 938530-939990
Length = 486
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 289 VESSTIASTTRRLGVLGLEEGSFNDLCWA 203
+ +++ T R LG +GL E + LCWA
Sbjct: 186 LRKGSLSMTIRELGHMGLPERALQTLCWA 214
>11_06_0452 +
23774378-23775054,23775228-23775411,23775911-23775996,
23776116-23777010
Length = 613
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 613 PNAKYARRYCQKSLKTVFIAGEHCDQD 693
P +Y+RR+ V GEHCD+D
Sbjct: 141 PKDRYSRRFSALFYNRVLSNGEHCDRD 167
>05_06_0221 + 26507795-26508937
Length = 380
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 480 HSSQERTVANVRMTDHPAQV*RRPPHSSLETIHLFHGPAERGCVAAGTLD 331
HS Q + NV DH + ++ + L P ++GCVAAG ++
Sbjct: 128 HSFQFLDLPNVIRLDHTFPQLMKDIEIAIVAVTLSRQPTQQGCVAAGIIE 177
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 153 ADIECYNVCGTTPEYEKAQQRSLNDPSSNPRTPNRRVVEAIV 278
+D C TP Q ND SSN RTPN + E ++
Sbjct: 821 SDTSCGQSVAVTPMVHPENQG--NDSSSNVRTPNAKSAEKLI 860
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 186 TPEYEKAQQRS-LNDPSSNPRTPNRRVVEAIVDDSTS 293
T +Y+ +QQ++ L PS +PRTP R V+ +S
Sbjct: 708 TLQYQSSQQKAQLPSPSPSPRTPTRDASPGQVNQDSS 744
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,000,992
Number of Sequences: 37544
Number of extensions: 430529
Number of successful extensions: 1105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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