Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_E06
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   186   3e-48
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   186   3e-48
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.64 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.84 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    28   1.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   5.9  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.8  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  186 bits (453), Expect = 3e-48
 Identities = 82/145 (56%), Positives = 108/145 (74%)
 Frame = +3

Query: 90  VMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 269
           V++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR R+RK   A+R G
Sbjct: 14  VLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLG 73

Query: 270 RHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFK 449
           RH G+GKR+GTA ARMP   +W                + KID+HLYH+LY++AKGN FK
Sbjct: 74  RHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFK 133

Query: 450 NKRVLMEYIHRKKAEKARTKMLSDQ 524
           +KR L+E+I R KAE  RTK++ +Q
Sbjct: 134 HKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  186 bits (453), Expect = 3e-48
 Identities = 82/145 (56%), Positives = 108/145 (74%)
 Frame = +3

Query: 90  VMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG 269
           V++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR R+RK   A+R G
Sbjct: 14  VLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLG 73

Query: 270 RHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFK 449
           RH G+GKR+GTA ARMP   +W                + KID+HLYH+LY++AKGN FK
Sbjct: 74  RHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFK 133

Query: 450 NKRVLMEYIHRKKAEKARTKMLSDQ 524
           +KR L+E+I R KAE  RTK++ +Q
Sbjct: 134 HKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 194 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 105
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 173 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 78
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 229 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 327
           ++V  K  K  E+++  AL RE V+P R  H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 490 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 398
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 629 FVFXSEGLQQFLLLGGNTFLAALACLLHFIAA 534
           +V   E   +FLLLG   F  A + LLH +++
Sbjct: 50  YVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,696
Number of Sequences: 5004
Number of extensions: 51583
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)