Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_E01
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    29   0.44 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   3.1  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   5.5  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    26   5.5  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    26   5.5  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   7.2  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.5  

>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 529 SQGKINRPYSTTNEELLDKRHPRTLFNASI--ILTCTNFFVIRVHD 398
           S GK+    S  ++ELLD R P T+  AS+  +  C N  V+ VH+
Sbjct: 243 SVGKVRVISSDFSKELLDLRLPETVAEASLKQMAWCGNDAVVLVHE 288


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 78  FKGSSTGPHGANVRLIIKHNVNKCILITGITSTCQGISRIAIEDI 212
           F+GS  G H  N R +   ++NK I + GI + C  +    I+ +
Sbjct: 106 FRGSF-GDHHVNPRTLRAMHLNKMISLEGIVTRCSFVRPKVIKSV 149


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 380 YYSFLQIMDSNYKEVSTRENYGSIKKCSWMPFI 478
           Y +F+Q  D NY +     NY  IK   W P I
Sbjct: 321 YITFVQ--DRNYNDSRYSLNYEKIKSLGWRPQI 351


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 212 KNKNSCCFLLNVHSFVESVFA 274
           K+ NSC +L +V SFVE  F+
Sbjct: 112 KDNNSCVWLNSVKSFVEKQFS 132


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 290 LPCMVVQTHFRQTNEHLTKNSTSFYSY 210
           +P M+V     Q+  HL  N  +FYS+
Sbjct: 119 MPSMIVSAFSHQSGWHLLFNMVAFYSF 145


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 273 ANTLSTNE*TFNKKQHEF 220
           A  L+T+E TFNKK HE+
Sbjct: 462 AQYLATDERTFNKKLHEW 479


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 479  KQFLVCSGVWTIY--FTLGMATGAPTVFI 559
            K  LVCSG WT +    L + T  P +FI
Sbjct: 1264 KGLLVCSGNWTAFKDVRLTLETQLPDLFI 1292


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 479  KQFLVCSGVWTIY--FTLGMATGAPTVFI 559
            K  LVCSG WT +    L + T  P +FI
Sbjct: 1264 KGLLVCSGNWTAFKDVRLTLETQLPDLFI 1292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,056
Number of Sequences: 5004
Number of extensions: 45411
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)