Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_E01
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0352 + 23395976-23396040,23396220-23396286,23396753-233971...    29   3.2  
03_05_0253 + 22416981-22416993,22417458-22417639,22417965-224181...    27   9.9  

>03_05_0352 +
           23395976-23396040,23396220-23396286,23396753-23397122,
           23397229-23397401,23397751-23397996
          Length = 306

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 233 NSTSFYSYIFNCNS*NPLTCTRNSSDQYALIYIMLND 123
           + T  Y Y+ N +S + + CT   S +YA +Y+   D
Sbjct: 204 SETPIYGYVMNNSSIHGIPCTVEISKKYADVYLPFED 240


>03_05_0253 +
           22416981-22416993,22417458-22417639,22417965-22418148,
           22418241-22418315,22418481-22418590,22419411-22419629,
           22419713-22419868,22419996-22420232
          Length = 391

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 398 IMDSNYKEVSTRENYGSIKKCSWMPFIKQFLVCSGVW--TIYFTLGMATGAPT 550
           I D+  +   T ++Y  I   +++ FI++++V  G W  TI   +    G PT
Sbjct: 249 IDDTTVRTQDTNQSYYEITSDAYLAFIRKYIVGIGPWKDTIVPPINNYLGPPT 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,025,686
Number of Sequences: 37544
Number of extensions: 266994
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)