Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_E01
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U64836-6|AAG24056.2|  201|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U80027-20|AAC48113.2|  400|Caenorhabditis elegans Hypothetical p...    29   2.2  
AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical ...    28   6.7  
U80029-19|AAB37598.1|  139|Caenorhabditis elegans Hypothetical p...    27   8.8  
AF003385-5|AAB54245.1|  494|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical
           protein T21C9.7 protein.
          Length = 303

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 467 MPFIKQFLVCSGVWTI-YFTLGMATGAPTVFIPQLRKEA 580
           MPF+   L  +  WTI YF+  + T   T   P LR  A
Sbjct: 257 MPFVSDILTFNHPWTIMYFSTKVRTSMATDHFPSLRSRA 295


>U64836-6|AAG24056.2|  201|Caenorhabditis elegans Hypothetical
           protein F10G2.1 protein.
          Length = 201

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 173 YMSRDFTNCN*RYKNKNSCCF 235
           Y+++DF +C+ + +NKNS C+
Sbjct: 108 YVAKDFADCSEKLENKNSTCY 128


>U80027-20|AAC48113.2|  400|Caenorhabditis elegans Hypothetical
           protein T28A11.2a protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +2

Query: 44  CAXFVAXFIRKIQRQLNRPARRQRTVNH*A*CK*VHTDHWNYEYMSRDFTNCN*RYKNKN 223
           C  F    +R +Q     PAR+Q+        K + T   +  ++S++FT+C+ + ++KN
Sbjct: 269 CTQFTPC-LRTLQCGPEHPARKQKL-------KLIRTYCESIVFISKNFTDCDAKLESKN 320

Query: 224 SCCF 235
           S C+
Sbjct: 321 STCY 324


>AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical
           protein Y49F6C.6 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 532 HSQGKINRPYSTTNEELLDKRHPRTLF 452
           +S   + RPY TTN +L+  + P+T F
Sbjct: 89  YSTTTVPRPYPTTNPKLISLQQPKTPF 115


>U80029-19|AAB37598.1|  139|Caenorhabditis elegans Hypothetical
           protein T20D4.19 protein.
          Length = 139

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 173 YMSRDFTNCN*RYKNKNSCCF 235
           Y S+DF  C+ + +N+NS C+
Sbjct: 110 YDSKDFAECSEKLENENSICY 130


>AF003385-5|AAB54245.1|  494|Caenorhabditis elegans Hypothetical
           protein R08F11.3 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 175 VLVIPVISMHLFTLCLMINRTLAPCGPVELPL 80
           VLV+  IS++LF L     R L P GP  LPL
Sbjct: 6   VLVLTGISIYLFHLLYWKRRNLPP-GPTPLPL 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,502,267
Number of Sequences: 27780
Number of extensions: 257545
Number of successful extensions: 670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)