Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_D24
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 163 1e-40
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 36 0.024
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 35 0.074
SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13) 34 0.13
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.23
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 31 0.69
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 31 0.69
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 30 1.6
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10) 30 1.6
SB_5747| Best HMM Match : NAF1 (HMM E-Value=7.3) 29 2.8
SB_59706| Best HMM Match : Trypsin (HMM E-Value=0.16) 29 2.8
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 3.7
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 29 4.9
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 28 8.5
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 163 bits (396), Expect = 1e-40
Identities = 87/160 (54%), Positives = 112/160 (70%), Gaps = 19/160 (11%)
Frame = +1
Query: 283 WDVPPPGFEHITPLQYKAMQAAGQI---------PANIVADT-------PQAAVPVV--G 408
WD+PP G+E ++ ++YK M+A GQI PA ++ T P +AV + G
Sbjct: 496 WDIPPLGYEQVSAMEYKTMRANGQIAAPAIGTVIPATALSATQSGASVLPASAVASLPHG 555
Query: 409 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLE 588
S +TRQARRLYVGNIPFGVTE +EFFN +M + L A GNPV+A QIN ++NFAF+E
Sbjct: 556 SQMTRQARRLYVGNIPFGVTENLMIEFFNAKMKEAKLNTAPGNPVIAAQINTEQNFAFIE 615
Query: 589 FRSIDETTQAMAFDGINFKGQSLKIRRPHDYXPMPG-TEN 705
RS++ETTQAMAFDGI +GQ+LKIRRP DY P+PG +EN
Sbjct: 616 LRSVEETTQAMAFDGIILQGQALKIRRPKDYQPIPGMSEN 655
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +1
Query: 430 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 609
R +++GN+PF + EE E F ++ + + + K F ++ F S D
Sbjct: 56 RSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDR-----KTGIGKGFGYVLFESKDAV 110
Query: 610 TQAMAFDGINFKGQSLKI 663
A+ + FKG+ +++
Sbjct: 111 VFALKMNNAEFKGRKIRV 128
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 34.7 bits (76), Expect = 0.074
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +1
Query: 361 ANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP 540
A +A QA R R ++VGNIP+ +EE+ E F++ +
Sbjct: 2 ATALAXIAQAQQKQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISF-----RL 56
Query: 541 VLACQINLDKNFAFLEFRSIDETTQAMA-FDGINFKGQSLKI 663
V + K + F E++ + AM +G G++L++
Sbjct: 57 VFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRV 98
>SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)
Length = 170
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +3
Query: 312 YHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVF 491
+H + + GD G C HT C A G YN C+ +T H + F
Sbjct: 94 HHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN-------CKHNTAGEHCELCDDGF 146
Query: 492 QSTNASIGPGPGRRQPC 542
A PG ++ PC
Sbjct: 147 YGNAADGTPGDCKQCPC 163
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 33.1 bits (72), Expect = 0.23
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +1
Query: 433 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 612
RLYVG++ F +TE F G + + + N K + F++FR +
Sbjct: 243 RLYVGSLHFNITEAMVKAVFEP----FGTVDSV-QLIYDSETNRSKGYGFVQFREAEAAK 297
Query: 613 QAM-AFDGINFKGQSLKI 663
+AM +G G+ LKI
Sbjct: 298 RAMEQMNGFELAGRPLKI 315
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 433 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 612
R+Y+G +P+G TE++ FF L INL N+ F+EF +
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLR-------------DINLKNNYGFVEFEDDRDAD 50
Query: 613 QAM 621
A+
Sbjct: 51 DAV 53
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 31.5 bits (68), Expect = 0.69
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 433 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 612
R+YVGN+P V E++ + F + H++ + L + FAF+EF +
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVD-------LKNRRGAGPPFAFVEFEDPRDAE 314
Query: 613 QAM-AFDGINFKGQSLKIRRP 672
A+ DG F G +++ P
Sbjct: 315 DAVKGRDGHEFDGYRIRVEFP 335
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/109 (22%), Positives = 51/109 (46%)
Frame = +1
Query: 379 TPQAAVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQI 558
TP+ VP ++ +++GN+ F +EET+ F ++ LS + + Q
Sbjct: 169 TPKKTVPA------KEEMSVFLGNLSFD-ADEETLAAFFEEKGLSATCR------VITQE 215
Query: 559 NLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLKIRRPHDYXPMPGTEN 705
+ F + +F S ++ +A+ +G + G+ ++I P + P G N
Sbjct: 216 GRSRGFGYADFTSKEDYNKALELNGEDCCGREIRI-NPANSKPSRGGGN 263
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +1
Query: 433 RLYVGNIPFGVTEEETMEFFN-QQMHLSG--LAQAAGNPVLACQINLDKNFAFLEFRS-I 600
++Y GN+PF +T++E F + + ++ + + N Q + F F+ F +
Sbjct: 51 KVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPE 110
Query: 601 DETTQAMAFDGINFKGQSLKI 663
D T + +G +G++LKI
Sbjct: 111 DAQTAVKSLNGKEVQGRTLKI 131
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +1
Query: 424 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD--KNFAFLEFRS 597
+ R+++VG + EE+ E+FN +G+ + + + N + FAF+ F +
Sbjct: 137 KTRKIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDN 196
Query: 598 --IDETTQAMAFDGINFKGQSLKIRRP 672
I E AM + I K +K P
Sbjct: 197 DEIVEKVCAMKYHEIRMKQCEVKKAEP 223
>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
Length = 466
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 282 LGCTAAGIRAYHAITIQGDASGGSDSCQYCRRHTTSC 392
L + I+ YH + D S SDSC+ CR T C
Sbjct: 84 LNTVSTRIKRYH---VDVDVSSSSDSCRICRDSTAGC 117
>SB_5747| Best HMM Match : NAF1 (HMM E-Value=7.3)
Length = 268
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 481 MEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 660
+E + QM GLA G+P ++ L K A F I + +Q +A D + L+
Sbjct: 112 LEAKDDQMGERGLAMPVGSPPPPLEVTLPKIEAIYVFCDIVDRSQCLALDEPSNVLACLE 171
Query: 661 IR-RPHD 678
R RPH+
Sbjct: 172 TRGRPHE 178
>SB_59706| Best HMM Match : Trypsin (HMM E-Value=0.16)
Length = 91
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 288 CTAAGIRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFD 413
C+ A R + ++ G ASGG DSCQ C G F+
Sbjct: 28 CSRAYSRLHESMVCAGRASGGIDSCQGDSGGPMVCEYNGKFN 69
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Frame = +1
Query: 391 AVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDK 570
++P++ + R LYVG + VTE++ + F Q L ++ P C
Sbjct: 291 SMPMLDTPTDRSITTLYVGGLEGKVTEQDLRDHFYQFGELRSISMV---PRQNCA----- 342
Query: 571 NFAFLEFRSIDETTQAMAFDGINFKGQSLKIR--RPHDYXPMPGTE 702
F R+ E +F+ + KG+ LKI + P PG +
Sbjct: 343 -FVCFTSRAAAEAAADRSFNKLILKGRRLKIMWGKSQGQQPAPGRQ 387
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 415 ITRQARRLYVGNIPFGVTEEETMEFFNQ 498
+ R+ R L+VGN+P + EE+ ++ F +
Sbjct: 1 MVRETRHLWVGNLPENIREEDIVKHFTR 28
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 439 YVGNIPFGVTEEETMEFFNQQMHLSG 516
++GN+P+ V E+ +EFF+ L G
Sbjct: 280 FLGNLPYDVEREDILEFFSSVKSLRG 305
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +1
Query: 403 VGSTITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAF 582
+G I+ RL+VG+IP +++E +E F++ +GL + A Q ++ FAF
Sbjct: 224 LGVCISVANSRLFVGSIPKTKSKQEILEEFSKV--TNGLDDVIVY-LSADQKGKNRGFAF 280
Query: 583 LEFRS 597
LE+ S
Sbjct: 281 LEYES 285
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = +3
Query: 381 TTSCRAGGGFDYNTSSAKVICRQHTLWRHRRRNNGVFQSTNASIGPGPGRRQ 536
T + R G +N ++ C Q + HR+R + V+ G G + Q
Sbjct: 71 TVAARRSGSPIFNFKEHRLFCGQPAKYNHRKRGSDVYPIPKGHDGEGEEKYQ 122
>SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 303 IRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAK 434
I+ H ++ + + S S C CR T C++ N S+++
Sbjct: 61 IKVVHTLSARPELSHCSGVCNICRHRTQECKSDDNKSLNGSNSR 104
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 27.9 bits (59), Expect = 8.5
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 427 ARRLYVGNIPFGVTEEETMEFF 492
+ R+Y+G +P+G E++ +FF
Sbjct: 2 SNRVYLGRLPYGTREDDVKKFF 23
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,052,538
Number of Sequences: 59808
Number of extensions: 449756
Number of successful extensions: 1180
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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