Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_D24
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 213 1e-55
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 213 1e-55
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 213 1e-55
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 213 1e-55
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 44 1e-04
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 37 0.016
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 34 0.087
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 34 0.087
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 34 0.087
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 34 0.087
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 33 0.20
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 33 0.20
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 32 0.46
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 32 0.46
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 32 0.46
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 31 0.61
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 28 5.7
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 28 5.7
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 28 5.7
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 7.5
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 27 9.9
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 27 9.9
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 213 bits (519), Expect = 1e-55
Identities = 98/140 (70%), Positives = 111/140 (79%)
Frame = +1
Query: 280 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 459
+WDVPP GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 138 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 193
Query: 460 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 639
G EE ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGIN
Sbjct: 194 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGIN 253
Query: 640 FKGQSLKIRRPHDYXPMPGT 699
F GQ LK+RRP DY P T
Sbjct: 254 FMGQQLKVRRPRDYQPSQNT 273
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 213 bits (519), Expect = 1e-55
Identities = 98/140 (70%), Positives = 111/140 (79%)
Frame = +1
Query: 280 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 459
+WDVPP GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 138 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 193
Query: 460 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 639
G EE ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGIN
Sbjct: 194 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGIN 253
Query: 640 FKGQSLKIRRPHDYXPMPGT 699
F GQ LK+RRP DY P T
Sbjct: 254 FMGQQLKVRRPRDYQPSQNT 273
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 213 bits (519), Expect = 1e-55
Identities = 98/140 (70%), Positives = 111/140 (79%)
Frame = +1
Query: 280 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 459
+WDVPP GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 113 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 168
Query: 460 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 639
G EE ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGIN
Sbjct: 169 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGIN 228
Query: 640 FKGQSLKIRRPHDYXPMPGT 699
F GQ LK+RRP DY P T
Sbjct: 229 FMGQQLKVRRPRDYQPSQNT 248
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 213 bits (519), Expect = 1e-55
Identities = 98/140 (70%), Positives = 111/140 (79%)
Frame = +1
Query: 280 YWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPF 459
+WDVPP GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+RRLYVGNIPF
Sbjct: 116 FWDVPPTGFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPF 171
Query: 460 GVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQAMAFDGIN 639
G EE ++FFNQQMHL GLAQA GNP+L CQINLDKNFAF+EFRSIDETT MAFDGIN
Sbjct: 172 GCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGIN 231
Query: 640 FKGQSLKIRRPHDYXPMPGT 699
F GQ LK+RRP DY P T
Sbjct: 232 FMGQQLKVRRPRDYQPSQNT 251
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +1
Query: 430 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLACQINLDKNFAFLEFRSIDE 606
R +YVGN+P GV E +E FN A+ A P L C +A++EF
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCA------YAYVEFSQQAS 216
Query: 607 TTQAMAFDGINFKGQSLKIR 666
A+ DG FK + LKI+
Sbjct: 217 VCNALQNDGFEFKERPLKIQ 236
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +1
Query: 430 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLACQINLDKNFAFLEFRSIDE 606
R +YVGN+P GV E +E FN A+ A P L C +A++EF
Sbjct: 163 RTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCA------YAYVEFSQQAS 216
Query: 607 TTQAMAFDGINFKGQSLKIR 666
A+ DG FK + LKI+
Sbjct: 217 VCNALQNDGFEFKERPLKIQ 236
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 436 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 615
+YVGN PF TE++ +F+Q ++S + V + + FAF+EF +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNV-----RIVCDRETGRPRGFAFVEFTEEAAAQR 60
Query: 616 AM-AFDGINFKGQSLKI 663
A+ F+G++F G++L++
Sbjct: 61 AVDQFNGVDFNGRALRV 77
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/78 (28%), Positives = 41/78 (52%)
Frame = +1
Query: 436 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETTQ 615
++VGN+PF +TE+ + FF+ Q+ G +A V K FAF+ F+ +
Sbjct: 248 IFVGNLPFEITEDALITFFSAQI---GPVEAV-RIVRDKDTGKGKGFAFVNFKQDSSVSL 303
Query: 616 AMAFDGINFKGQSLKIRR 669
A++ + I + + L+I +
Sbjct: 304 ALSMETIKMEKRDLRITK 321
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 37.5 bits (83), Expect = 0.009
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +1
Query: 436 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLAC--QINLDKNFAFLEFRSIDET 609
+YVGN PF TEEE FF S + Q N + C + + FAF+EF
Sbjct: 7 VYVGNAPFQTTEEELGNFF------SSIGQ-INNVRIVCDRETGRPRGFAFIEFAEEGSA 59
Query: 610 TQAM-AFDGINFKGQSLKI 663
+A+ +G F G+ L++
Sbjct: 60 QRAVEQMNGAEFNGRPLRV 78
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 36.7 bits (81), Expect = 0.016
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 424 QARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSID 603
Q +YVGN+P+ TEEE +F H++ + V + + FAF+EF
Sbjct: 4 QGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNV-----RIVYDRETGRPRGFAFVEFSEEA 58
Query: 604 ETTQAM-AFDGINFKGQSLKI 663
+A+ +G+ F G++L++
Sbjct: 59 GAQRAVEQLNGVAFNGRNLRV 79
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 34.3 bits (75), Expect = 0.087
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 427 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQ--INLDKNFAFLEFRSI 600
A+ +YVGN+ +G T EE Q H G + + C K FA++EF
Sbjct: 77 AKSVYVGNVDYGATAEE----IEQHFHGCG---SVSRVTIQCDRFSGHPKGFAYVEFTEK 129
Query: 601 DETTQAMAFDGINFKGQSLKIRRPHDYXPMPGTEN 705
+ A+A +G+ +K+ P T N
Sbjct: 130 EGMQNALAMTDSLLRGRQIKVDPKRTNKPGMSTTN 164
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 34.3 bits (75), Expect = 0.087
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +1
Query: 430 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 609
R L+VGN+P V E E F + G + + IN D +AF+ F+++D+
Sbjct: 169 RTLFVGNMPSDVKEREIRHVFEEH----GKVEEVD---IKTPINTDAAYAFVMFQTVDQA 221
Query: 610 TQAMA 624
QA A
Sbjct: 222 IQAKA 226
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 34.3 bits (75), Expect = 0.087
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +1
Query: 430 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 609
R L+VGN+P V E E F + G + + IN D +AF+ F+++D+
Sbjct: 169 RTLFVGNMPSDVKEREIRHVFEEH----GKVEEVD---IKTPINTDAAYAFVMFQTVDQA 221
Query: 610 TQAMA 624
QA A
Sbjct: 222 IQAKA 226
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 34.3 bits (75), Expect = 0.087
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +1
Query: 430 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 609
R L+VGN+P V E E F + G + + IN D +AF+ F+++D+
Sbjct: 146 RTLFVGNMPSDVKEREIRHVFEEH----GKVEEVD---IKTPINTDAAYAFVMFQTVDQA 198
Query: 610 TQAMA 624
QA A
Sbjct: 199 IQAKA 203
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +1
Query: 427 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINL-DKNFAFLEFRSID 603
A+ +++GN+ F T EE E H G Q + + KNFA++EF
Sbjct: 54 AKSVFIGNVDFNSTIEEIEE------HFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSS 107
Query: 604 ETTQAMAFDGINFKGQSLKIRRPHDYXPMPG 696
A+ +G F+ + + + P G
Sbjct: 108 SIENALVMNGSLFRSRPIVVTAKRTNIPGMG 138
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +1
Query: 427 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDE 606
AR +YVGN+ + T E E F + G P KNFAF+EF+ ++
Sbjct: 45 ARSVYVGNVDWKSTVSEIEEHFA----VCGKVARVTIPKDKFT-GYQKNFAFVEFQKLES 99
Query: 607 TTQAMAFDGINFKGQSLKI 663
A+ G F+ + + +
Sbjct: 100 VQLALVLSGTMFRNRKIMV 118
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +1
Query: 433 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 612
RL++ N+P+ E++ F + +S + AC K FA +EF +
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGAC-----KGFAIVEFVFPEAAV 334
Query: 613 QA-MAFDGINFKGQSLKI 663
A A DG FKG+ + I
Sbjct: 335 AAYSALDGYVFKGRMMHI 352
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 31.9 bits (69), Expect = 0.46
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +1
Query: 430 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 609
+++YVGN+P V E+E + F++ + + +G FAF+EF +
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGR---------GPAFAFVEFEDHRDA 59
Query: 610 TQAM-AFDGINFKGQSLKIRRPHDYXPM-PG 696
A+ A DG F G+ +++ P PG
Sbjct: 60 EDAVRARDGYEFDGRRIRVEFTRGVGPRGPG 90
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 31.9 bits (69), Expect = 0.46
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 430 RRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDET 609
+++YVGN+P V E+E + F++ + + +G FAF+EF +
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGR---------GPAFAFVEFEDHRDA 59
Query: 610 TQAM-AFDGINFKGQSLKIRRPHDYXPMPGTENP 708
A+ A DG F G+ +++ P + P
Sbjct: 60 EDAVRARDGYEFDGRRIRVEFTRGVGPRGPSGRP 93
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 31.5 bits (68), Expect = 0.61
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Frame = +1
Query: 427 ARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINL-DKNFAFLEFRSID 603
A+ +++GN+ F T EE E H G + + KNFA++EF
Sbjct: 60 AKSVFIGNVDFNSTIEEVEE------HFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSS 113
Query: 604 ETTQAMAFDGINFKGQSLKIRRPHDYXPMPG 696
A+ +G F+ + + + P G
Sbjct: 114 SIENALVMNGSLFRSRPIVVTAKRTNIPGMG 144
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Frame = +1
Query: 409 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD----KNF 576
S+ T RRL+V NIPF E + L+ + + G PV+ +I + K F
Sbjct: 93 SSSTDGPRRLHVSNIPFKYREPD----------LTAMFEKVG-PVVDVEIIFNERGSKGF 141
Query: 577 AFLEFRSIDETTQAMA-FDGINFKGQSLKI 663
F+ ++ D+ +A A F+G +G+ +++
Sbjct: 142 GFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Frame = +1
Query: 409 STITRQARRLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLD----KNF 576
S+ T RRL+V NIPF E + L+ + + G PV+ +I + K F
Sbjct: 93 SSSTDGPRRLHVSNIPFKYREPD----------LTAMFEKVG-PVVDVEIIFNERGSKGF 141
Query: 577 AFLEFRSIDETTQAMA-FDGINFKGQSLKI 663
F+ ++ D+ +A A F+G +G+ +++
Sbjct: 142 GFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 391 AVPVVGSTITRQARRLYVGNIPFGVTEEETMEFFNQ 498
A PVVGS T +++VG +P+ +++ E+F Q
Sbjct: 23 AEPVVGSRDT-MFTKIFVGGLPYHTSDKTLHEYFEQ 57
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 430 RRLYVGNIPFGVTEEE 477
R++YVGN+PF TE+E
Sbjct: 17 RQVYVGNMPFDATEKE 32
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = +1
Query: 277 LYWDVPPPGFEHITPLQYKAMQAAGQIPANI----VADTPQAAVPVVGSTITRQARRLYV 444
L W+ EH P +A + + V TP+ P V +T TR A RL
Sbjct: 619 LSWEETEEDEEHAVPTTTPLAPSAPTVRVSTQRAPVPTTPRPTAPAVQTTTTR-ASRLET 677
Query: 445 GNIPFGVTEEETME 486
+P E+E E
Sbjct: 678 TRVPVKTVEDEEEE 691
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 433 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 612
RL+VGN+P V E E E F+ + C ++ K FAFL +
Sbjct: 117 RLFVGNLPNEVKETELKELFSPH-----------GDIAECYLS-GKGFAFLRLDTRAHAE 164
Query: 613 QAM-AFDGINFKGQSLKIR 666
A A DG G+ +++R
Sbjct: 165 SAKEAIDGRIIHGRQVRVR 183
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 433 RLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQINLDKNFAFLEFRSIDETT 612
RL+VGN+P V E E E F+ + C ++ K FAFL +
Sbjct: 117 RLFVGNLPNEVKETELKELFSPH-----------GDIAECYLS-GKGFAFLRLDTRAHAE 164
Query: 613 QAM-AFDGINFKGQSLKIR 666
A A DG G+ +++R
Sbjct: 165 SAKEAIDGRIIHGRQVRVR 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,414,616
Number of Sequences: 27780
Number of extensions: 334026
Number of successful extensions: 830
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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