Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_D23
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 107 1e-24
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 74 3e-14
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 33 0.035
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.76
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 29 0.76
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 28 1.8
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 1.8
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 28 1.8
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.3
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 5.4
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 26 7.1
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 7.1
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 9.4
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 107 bits (258), Expect = 1e-24
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Frame = +1
Query: 343 LEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ-IGDWLKKMLHYNLVGGKHTRGITTVIS 519
+ ++++ F+ LP + + N K +P + +W K L +N +GGK+ RG++ + S
Sbjct: 1 MSAVDKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDS 60
Query: 520 YKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGIT 699
Y+ + + E A LGW VE+ Q++ ++ DDIMD S RRG PCWY P VG
Sbjct: 61 YEIL-LGHPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVG-N 118
Query: 700 CAFNDSLLIHSSLFEFLKTNFRTXPNYMKM 789
A ND+ ++ S+++ LK +FR Y+ +
Sbjct: 119 IAINDAFMVESAIYFLLKKHFRQESCYVDL 148
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 73.7 bits (173), Expect = 3e-14
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
Frame = +1
Query: 361 KKMFDDLLPEVIMTLQN-KSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK 537
KK D P V+ ++ + P+ + L + N +GGK+ RG+ + S ++
Sbjct: 12 KKRLLDFFPVVLEGIREILESMQYFPEETEKLLYSIKRNTLGGKNNRGLAVLQSLTSLIN 71
Query: 538 PEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDS 717
E + E + A LGW +E+ Q ++ DDIMD S RRG+ CWY VG+ A N+S
Sbjct: 72 RE-LEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYL--VVGVRRAINES 128
Query: 718 LLIHSSLFEFLKTNFRTXPNYMKM 789
L+ + + ++ FR P Y+ +
Sbjct: 129 QLLEACIPLLIRKYFRNMPYYVDL 152
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 33.5 bits (73), Expect = 0.035
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +1
Query: 307 NNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGG 486
N S+N T + NL+ + KK +LP +TLQ K KL G K LH +++ G
Sbjct: 254 NISSNSTVSDLNLKTL--KKRLRGVLPPSFLTLQEKKKLE---NRGVKKKTSLHKSVIEG 308
Query: 487 KHTRGI 504
+ +G+
Sbjct: 309 EKIKGV 314
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -3
Query: 396 NYFREEIVEHF---LFINYFEIF*GCRHICAIILISDQLWPIFVCNF 265
N F ++++E+F + ++YF IF H+C+ S +W +C+F
Sbjct: 504 NSFNQKLMEYFKGFVKLDYFSIFITFLHVCSFGSNSFTVWEDRLCHF 550
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 29.1 bits (62), Expect = 0.76
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 717 RVVKGACDAHFRTPIPTGHAASDA*TIHNVIQHNAICLKHFDTPSQFTSHFQSMF 553
R++ G P+ HA S TI ++I L+ +PS+F + F+S F
Sbjct: 545 RIISGPLGLVHPDPLVASHARSSMQTIESLIHPRFPPLQKHLSPSEFENTFESRF 599
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 105 KLLVETTTLSIEAYR-RQGGRCLYYRKEYTKIIG 7
KL TL + Y +QGG C Y+R+ Y ++IG
Sbjct: 574 KLAEWDRTLLCDGYLCQQGGDCPYWRRRYFQLIG 607
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 420 LGFVL*CHNYFREEIVEHFLFINYFEIF*GCRHICAIILISDQLWP 283
LGF + H+Y HF+ ++ +F CR I +L S L P
Sbjct: 97 LGFCVLAHDYVNLINARHFMIEHFLSLFAFCRTILFSLLTSFLLVP 142
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 550 TEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMP 666
T L +L EM ++ DD++D ++VRRG P
Sbjct: 112 TGQILPSQLRLAQITEMIHIASLLHDDVIDHANVRRGSP 150
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 84 LWSLLITFSWIILHHYCLSSAVWIATWTEL 173
LW +LI+ + + + +CL +VW W EL
Sbjct: 578 LWYILISTIYSLAYAFCLGISVW-TPWREL 606
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -1
Query: 362 FSLIISRFF-EAVVIFALLFLYLISCGQYLYV 270
FSL+IS FF +++I A+L L + SC YL++
Sbjct: 171 FSLVISWFFTHSIIISAVLPLAISSC-MYLWM 201
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -3
Query: 288 WPIFVCNFTGKFETIKYTHVYYVMKSNALVEPYTFLFSTVQSTL 157
WP VC ++ FE + Y + +S L L+ T + L
Sbjct: 16 WPADVCKYSQVFEDVLVVGTYMLDESTKLRHGKLVLYDTKEDVL 59
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 427 EVPQIGDWLKKMLHYNLVGGKHTRGI 504
E+ +I D+L+ H+ +GGK RG+
Sbjct: 278 ELEEIVDFLRDPTHFTRLGGKLPRGV 303
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 542 SGFSIVLYEITVVIPLVCLPPTK 474
+G L+E++V +PL +PP+K
Sbjct: 375 TGVEAPLFELSVSMPLTLIPPSK 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,106
Number of Sequences: 5004
Number of extensions: 76121
Number of successful extensions: 218
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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