Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D21
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   1.3  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    28   1.3  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        27   3.9  
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    27   3.9  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   5.2  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    26   6.9  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    26   6.9  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    25   9.1  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 699  HFLISEKL*YIIATVERIKFNYSSHLHWSNFVSEAGSDTGVD 574
            HFLISE     +A +  + F++ SH  +++  SE   DT  D
Sbjct: 978  HFLISEWRWEDVAQILFLIFDFFSHRKFNDLSSEISEDTPTD 1019


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 328 EESFQRTLVPHRWQWMSPRVGHG*DSKGVGGPKESLH 218
           EES +R LV  R     P+VG G  S   GGP +S++
Sbjct: 564 EESMRRWLVRLRQACCHPQVGFGNKSAFGGGPMKSIN 600


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 290 PSMWNQRSLKTFLQ--RRNSKLLLKRLCQ*RVTMKATEKRPSLNWRSLSQLRLAKTSGSL 463
           P  W  + + + L   R+NS++     C  + T++  +K    NW  ++ L    T   +
Sbjct: 274 PPSWKTQQMMSHLNLSRKNSEVSKTCKCLQKETIRCNKKSNCYNWNGIAALETYTTECHI 333

Query: 464 VIGKKK 481
            I  K+
Sbjct: 334 QIPDKE 339


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 570 HPNNRHLMERWLRHFVNGGHI 508
           HP+N HL++R+L H     H+
Sbjct: 83  HPSNVHLVDRYLIHRTENQHV 103


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 654 ERIKFNYSSHLHWSNFVSEAGSDTGVD 574
           ER++   +    W  F  EAG ++GVD
Sbjct: 59  ERVQHAVAERKKWKKFGKEAGKNSGVD 85


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 272 SRGHPLPSMWNQRSLKTFLQRRNSKLLLKR 361
           +R H L S  NQ+    FL+  NSKL+ +R
Sbjct: 33  ARIHQLISQRNQKFQANFLEWENSKLVYRR 62


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 345 FEFLRWRKVFNERWFHIDGSGCPRE 271
           F+ +  R  F  RWF ++G G PRE
Sbjct: 14  FDVIVARSAFG-RWFRLEGCGHPRE 37


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 379 DYESDGEEAFPELEVPEPIEASKNF 453
           DY+ D E   PE + P+  EA K++
Sbjct: 5   DYDFDIESVLPEEKAPQVSEAKKDY 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,604
Number of Sequences: 5004
Number of extensions: 65407
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)