Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_D21
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0251 + 16436846-16438237 32 0.58
04_04_1425 + 33463039-33463330,33464370-33464460,33465299-334656... 31 1.0
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213... 31 1.3
07_03_1749 + 29201116-29201193,29201294-29201371,29201442-292015... 30 1.8
01_01_1231 + 9961783-9961817,9962612-9963161,9964441-9965691 30 2.3
01_01_0356 - 2814175-2815401 29 4.1
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 29 5.4
12_01_0419 - 3316866-3318172,3318249-3318360 28 9.5
11_06_0703 + 26444128-26446215,26446525-26447226 28 9.5
03_05_0019 + 19862171-19863049 28 9.5
>12_02_0251 + 16436846-16438237
Length = 463
Score = 31.9 bits (69), Expect = 0.58
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +3
Query: 489 GRRCSGRCARRLQSASASAPSDAGYWGVHRPPCPNRLQIQS*TN----AGETSN*ILFFQ 656
G S R A RL S S + D GVHR PC L + +GE S ++
Sbjct: 356 GCGASARSAPRLLSVSCTRVVDLTTTGVHRSPCSPPLPVPESDEVFVWSGEASGAVVLRL 415
Query: 657 RSQLCII 677
R LC++
Sbjct: 416 RGTLCLL 422
>04_04_1425 +
33463039-33463330,33464370-33464460,33465299-33465656,
33465771-33465944,33466403-33466607,33466717-33466784,
33467279-33467360,33467513-33467549,33467822-33467913,
33469219-33469294,33469402-33469585,33469859-33469867
Length = 555
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +1
Query: 292 IDVEPAFVENFPP-------AQEFEVAPKALVSVTSDYESDGEEAFPELEVPEPIEASKN 450
+D+ +++++ PP +Q+F+ P A + + DYE + + P +V E N
Sbjct: 257 VDLAKSYMQSLPPWQSPFLGSQKFKTPPSAGLHMY-DYEGKSKYSLPSSKVTTKEEYLSN 315
Query: 451 FWIVSDRKKEVLLDAGALGDVPAVYKVPQ 537
FW + + L G+ G P KV Q
Sbjct: 316 FWENLEESRRSRL--GSSGSSPDASKVRQ 342
>09_03_0177 -
13120816-13120941,13121032-13121137,13121231-13121305,
13121385-13121461,13122462-13122549,13122638-13122699,
13122807-13122863,13122960-13123049,13123186-13123251,
13123530-13123619,13123711-13123804,13123915-13124213
Length = 409
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 556 ASDGA-LAEALCKRRAHLPEHLRPVILLFSDH*RSRSFC*PQLAQGPPVQGRPLLRRFHS 380
+SDGA LA L A P L + F D R + P L+ P PLLR HS
Sbjct: 27 SSDGAALASLLAVSSAQAPAPLSDALSAFPDFPRLAADRYPHLSDLLP----PLLRAIHS 82
Query: 379 HSL 371
HSL
Sbjct: 83 HSL 85
>07_03_1749 +
29201116-29201193,29201294-29201371,29201442-29201540,
29202958-29203020,29203101-29203298,29203359-29203472,
29203744-29203806,29203912-29204208,29204774-29204935,
29205061-29205244,29205771-29205820
Length = 461
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 395 EKRPSLNWRSLSQLRLAKTSGSLVIGKKKYYWTQVLWEMCPPFTKCLSQRSIRCRLLG 568
+K SL+WRSLS +R+ + LV +K+ Q+L + K +R I C LLG
Sbjct: 183 QKLDSLSWRSLSGVRVNEQIVQLVPNAQKF---QILLRCIKLWAK---RRGIHCHLLG 234
>01_01_1231 + 9961783-9961817,9962612-9963161,9964441-9965691
Length = 611
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 373 TSDYESDGEEAFPELEVPEPIEASKNFWIVSDRKK-EVLLDAGALGDVPAVYKVPQPALH 549
+ D + + EE F +LEVP P K+ + SD E +DA L V A K +P
Sbjct: 83 SGDKQDELEEGFSDLEVP-PEADKKDLDLTSDESSDEDTIDAIGLSQVEADAKPEEPIKK 141
Query: 550 QMPVI--GVYIDPRV 588
+ + + PRV
Sbjct: 142 SQSTLLKALLVSPRV 156
>01_01_0356 - 2814175-2815401
Length = 408
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 242 NAFGILPVPDSRGHPLPSMWNQRSLKTFLQRRNSKLLLKRL 364
+ FG LPVP S PL S + S++ RR +LL RL
Sbjct: 74 STFGFLPVPSSPLRPLASSGSSNSVQPLAARRG--VLLMRL 112
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 271 LAGTSTAIDVEPAFVENFPPAQEFEVAPKALVSVTSDYESDGEEAFPELEVPE 429
LA T A+ + + Q VAP+ VTS Y D A P +P+
Sbjct: 304 LAQTPPAVPISSTDTHSSEQGQHSSVAPRTTNIVTSAYNPDQSWASPAQSIPD 356
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 301 EPAFVENFPPAQEFEVAPKALVSVTSDYESDGEE 402
EP + P A E E PK S + DY + GEE
Sbjct: 378 EPPAADETPAAGEPEEQPKPRSSDSEDYSTSGEE 411
>11_06_0703 + 26444128-26446215,26446525-26447226
Length = 929
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 238 LQRLWNLTRARLAGTSTAIDVEPAFVENFPPAQEFEVAPKALVSVTSDYESDGEEAFPE 414
L L NL R ++ + + P F+ FP ++E PK + +D + E AF E
Sbjct: 694 LVMLPNLERLKIVKATAITKIGPEFIGQFPRSREAVAFPKLEWLIINDMPNWEEWAFIE 752
>03_05_0019 + 19862171-19863049
Length = 292
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 222 RDSFGPPTPLESYPCPTRGDIHCHRCGTSV 311
R + PP P+ P PTRG C CG ++
Sbjct: 219 RPTILPPPPVVKRPSPTRG--KCQYCGAAI 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,087,957
Number of Sequences: 37544
Number of extensions: 469304
Number of successful extensions: 1295
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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