Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_D20
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_02_0019 + 11877119-11879984,11880316-11880389,11881293-118815... 31 0.58
11_06_0220 - 21374816-21376849 29 3.1
09_02_0384 - 8294914-8297817 29 3.1
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 29 4.1
07_01_0008 - 56178-57095 28 5.4
06_01_0787 - 5889596-5890389,5890849-5891230 28 5.4
12_02_0414 + 18824347-18825161,18826018-18828229 27 9.5
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 27 9.5
12_02_0269 - 16617292-16618852,16622763-16623562 27 9.5
10_02_0120 + 5492373-5492513,5494155-5494250 27 9.5
09_04_0744 - 19867604-19867686,19868075-19869872,19870777-198708... 27 9.5
>07_02_0019 +
11877119-11879984,11880316-11880389,11881293-11881511,
11881557-11881679,11881759-11881859,11881938-11881990,
11882084-11882269,11882677-11882894
Length = 1279
Score = 31.5 bits (68), Expect = 0.58
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +3
Query: 249 SVLENKGYAINIYTK----HS-SEAISQEEFQRLNKEDWTKKTTQEIFEIFPIFGKYCSQ 413
S +EN G + N+YT H ++ E+ L +E TK F P+ YC +
Sbjct: 443 SEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCRE 502
Query: 414 HSLCISSEIFD 446
++ ++ EIFD
Sbjct: 503 GNVSLACEIFD 513
>11_06_0220 - 21374816-21376849
Length = 677
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 184 LFIVVLGYSLKCIWKKRMNMHTVC*KIKVMQ*IFIQNILAKLYLK 318
L +V GY+ W+ R MHT+ K+ +F+ N L LY++
Sbjct: 224 LVTLVSGYAGFGSWEGRGMMHTIVIKLGFQLNLFVSNALLDLYVE 268
>09_02_0384 - 8294914-8297817
Length = 967
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 453 IDNLTDTIQMATDS----QLKTLFYSLNMWPETASIRTRNYIEVWAALDDECLKRLKNWS 620
I+ + T++++ D+ QLK F +WPE SI T + + W L + R N S
Sbjct: 382 INPILSTLRISYDNLENDQLKECFLVCLLWPEGYSIWTVDLVNCWIGLGLVPVGRTINDS 441
Query: 621 HD 626
H+
Sbjct: 442 HN 443
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 426 ISSEIFDN-FIDNLTDTIQMATDS---QLKTLFYSLNMWPETASIRTRNYIEVWAA 581
+ SEI N +D L ++++ + LKT F L+++PE +IR + + W A
Sbjct: 942 LGSEIETNPSLDRLKKILELSYNDLPYHLKTCFLYLSIYPEDHNIRRKTILRRWVA 997
>07_01_0008 - 56178-57095
Length = 305
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 588 HQVQPIPQYSFLF*SMLFLATCLRNKKEFLIVSQ*PFVWYQL 463
H+ QP P + + + S+LF A C FL+ FVWY L
Sbjct: 222 HRPQPHPHHYYPWLSLLFAAACGAMLTFFLL-----FVWYSL 258
>06_01_0787 - 5889596-5890389,5890849-5891230
Length = 391
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 528 WPETASIRTRNYIEVWAALDD 590
+PET +RTR ++E W + D
Sbjct: 85 YPETPGVRTREHVEAWKPIVD 105
>12_02_0414 + 18824347-18825161,18826018-18828229
Length = 1008
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 498 LKTLFYSLNMWPETASIRTRNYIEVWAA 581
LKT S++M+P+ SIR ++ + W A
Sbjct: 428 LKTCLLSVSMFPKNYSIRRKSLVRRWMA 455
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 498 LKTLFYSLNMWPETASIRTRNYIEVWAA 581
LKT F L+++PE I+ R+ + W A
Sbjct: 398 LKTCFMYLSVFPEDRKIKKRHLVSKWIA 425
>12_02_0269 - 16617292-16618852,16622763-16623562
Length = 786
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 492 SQLKTLFYSLNMWPETASIRTRNYIEVWAA 581
S LKT F L+M+PE I ++ + W A
Sbjct: 420 SDLKTCFLYLHMYPENYDIMKKDSMRQWIA 449
>10_02_0120 + 5492373-5492513,5494155-5494250
Length = 78
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 584 KCSPYLNIVSCSN-RCCFWPHV*GIKKSF*L*VSSHLYGI 468
+ S ++N V+ N + C W + G+KKS L LYG+
Sbjct: 34 RLSTFVNAVALGNVKYCIWAELYGLKKSVELCGLKKLYGL 73
>09_04_0744 -
19867604-19867686,19868075-19869872,19870777-19870801,
19872313-19872710
Length = 767
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 426 ISSEIFDNFIDNLTDTIQMATDS---QLKTLFYSLNMWPETASIRTRNYIEVWAA 581
+ +E+ + + N+T I + D LK++F L+++PE IR + W A
Sbjct: 196 LGAELESSDLRNITKVIVSSYDGLPYYLKSIFLYLSIFPENHEIRCTRLLRRWMA 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,803,423
Number of Sequences: 37544
Number of extensions: 264716
Number of successful extensions: 645
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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