Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_D20
(638 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY260057-1|AAO85037.1| 629|Drosophila melanogaster CG2124 protein. 59 4e-09
AY260056-1|AAO85035.1| 629|Drosophila melanogaster CG2124 protein. 59 4e-09
AY260055-1|AAO85033.1| 629|Drosophila melanogaster CG2124 protein. 59 4e-09
AY071525-1|AAL49147.1| 629|Drosophila melanogaster RE57138p pro... 59 4e-09
AE014298-1471|AAF46606.1| 629|Drosophila melanogaster CG2124-PA... 59 4e-09
X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein ... 33 0.43
X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein ... 33 0.43
AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-P... 33 0.43
AE014297-2908|AAF55834.2| 4496|Drosophila melanogaster CG3723-PA... 30 3.0
>AY260057-1|AAO85037.1| 629|Drosophila melanogaster CG2124 protein.
Length = 629
Score = 59.3 bits (137), Expect = 4e-09
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Frame = +3
Query: 213 KMYMEKENEYAYSVLEN--KGYAINIYTKHSS--EAISQEEFQRLNKEDWTKKTTQEIFE 380
+++ ++EN++A+ +L + K YAI + + S+ + + E F R + + +++
Sbjct: 28 RIFADRENQFAHGILMDSLKPYAI-LRPRDSAWQDLPASEGFMRPQPD----ASAADLYA 82
Query: 381 IFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRN 560
F ++C++ L IS ++ F + + TD QL +L P S + +N
Sbjct: 83 DFLGLVRHCNRMELKISDSRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKN 142
Query: 561 YIEVWAALDDECLKRLKNWSHDEM 632
Y+E+W LD EC +R++ WS +++
Sbjct: 143 YMEIWNTLDIECCRRIERWSSEQL 166
>AY260056-1|AAO85035.1| 629|Drosophila melanogaster CG2124 protein.
Length = 629
Score = 59.3 bits (137), Expect = 4e-09
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Frame = +3
Query: 213 KMYMEKENEYAYSVLEN--KGYAINIYTKHSS--EAISQEEFQRLNKEDWTKKTTQEIFE 380
+++ ++EN++A+ +L + K YAI + + S+ + + E F R + + +++
Sbjct: 28 RIFADRENQFAHGILMDSLKPYAI-LRPRDSAWQDLPASEGFMRPQPD----ASAADLYA 82
Query: 381 IFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRN 560
F ++C++ L IS ++ F + + TD QL +L P S + +N
Sbjct: 83 DFLGLVRHCNRMELKISDSRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKN 142
Query: 561 YIEVWAALDDECLKRLKNWSHDEM 632
Y+E+W LD EC +R++ WS +++
Sbjct: 143 YMEIWNTLDIECCRRIERWSSEQL 166
>AY260055-1|AAO85033.1| 629|Drosophila melanogaster CG2124 protein.
Length = 629
Score = 59.3 bits (137), Expect = 4e-09
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Frame = +3
Query: 213 KMYMEKENEYAYSVLEN--KGYAINIYTKHSS--EAISQEEFQRLNKEDWTKKTTQEIFE 380
+++ ++EN++A+ +L + K YAI + + S+ + + E F R + + +++
Sbjct: 28 RIFADRENQFAHGILMDSLKPYAI-LRPRDSAWQDLPASEGFMRPQPD----ASAADLYA 82
Query: 381 IFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRN 560
F ++C++ L IS ++ F + + TD QL +L P S + +N
Sbjct: 83 DFLGLVRHCNRMELKISDSRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKN 142
Query: 561 YIEVWAALDDECLKRLKNWSHDEM 632
Y+E+W LD EC +R++ WS +++
Sbjct: 143 YMEIWNTLDIECCRRIERWSSEQL 166
>AY071525-1|AAL49147.1| 629|Drosophila melanogaster RE57138p
protein.
Length = 629
Score = 59.3 bits (137), Expect = 4e-09
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Frame = +3
Query: 213 KMYMEKENEYAYSVLEN--KGYAINIYTKHSS--EAISQEEFQRLNKEDWTKKTTQEIFE 380
+++ ++EN++A+ +L + K YAI + + S+ + + E F R + + +++
Sbjct: 28 RIFADRENQFAHGILMDSLKPYAI-LRPRDSAWQDLPASEGFMRPQPD----ASAADLYA 82
Query: 381 IFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRN 560
F ++C++ L IS ++ F + + TD QL +L P S + +N
Sbjct: 83 DFLGLVRHCNRMELKISDSRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKN 142
Query: 561 YIEVWAALDDECLKRLKNWSHDEM 632
Y+E+W LD EC +R++ WS +++
Sbjct: 143 YMEIWNTLDIECCRRIERWSSEQL 166
>AE014298-1471|AAF46606.1| 629|Drosophila melanogaster CG2124-PA
protein.
Length = 629
Score = 59.3 bits (137), Expect = 4e-09
Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
Frame = +3
Query: 213 KMYMEKENEYAYSVLEN--KGYAINIYTKHSS--EAISQEEFQRLNKEDWTKKTTQEIFE 380
+++ ++EN++A+ +L + K YAI + + S+ + + E F R + + +++
Sbjct: 28 RIFADRENQFAHGILMDSLKPYAI-LRPRDSAWQDLPASEGFMRPQPD----ASAADLYA 82
Query: 381 IFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRN 560
F ++C++ L IS ++ F + + TD QL +L P S + +N
Sbjct: 83 DFLGLVRHCNRMELKISDSRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKN 142
Query: 561 YIEVWAALDDECLKRLKNWSHDEM 632
Y+E+W LD EC +R++ WS +++
Sbjct: 143 YMEIWNTLDIECCRRIERWSSEQL 166
>X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein
protein.
Length = 1332
Score = 32.7 bits (71), Expect = 0.43
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Frame = +3
Query: 258 ENKGYAINIYTKHSSEAISQEE--FQRLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCIS 431
E+ YA++ S+E + ++ + + + + +F I K S+ L IS
Sbjct: 613 EDLSYALSEEHSSSNEKLDKKPGASKTMRPPEHVDTDLETDISVFSIQKKRKSKSKLVIS 672
Query: 432 SEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRNYIEVWAALDDEC 596
+E+ NF D+ TDT++ + K W E ++T+ IE L C
Sbjct: 673 NELH-NFEDSSTDTLEKGRPNPSKGDLKLRARWVEVNKVQTQALIETEKFLQKTC 726
>X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein
protein.
Length = 1332
Score = 32.7 bits (71), Expect = 0.43
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Frame = +3
Query: 258 ENKGYAINIYTKHSSEAISQEE--FQRLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCIS 431
E+ YA++ S+E + ++ + + + + +F I K S+ L IS
Sbjct: 613 EDLSYALSEEHSSSNEKLDKKPGASKTMRPPEHVDTDLETDISVFSIQKKRKSKSKLVIS 672
Query: 432 SEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRNYIEVWAALDDEC 596
+E+ NF D+ TDT++ + K W E ++T+ IE L C
Sbjct: 673 NELH-NFEDSSTDTLEKGRPNPSKGDLKLRARWVEVNKVQTQALIETEKFLQKTC 726
>AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-PA
protein.
Length = 1332
Score = 32.7 bits (71), Expect = 0.43
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Frame = +3
Query: 258 ENKGYAINIYTKHSSEAISQEE--FQRLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCIS 431
E+ YA++ S+E + ++ + + + + +F I K S+ L IS
Sbjct: 613 EDLSYALSEEHSSSNEKLDKKPGASKTMRPPEHVDTDLETDISVFSIQKKRKSKSKLVIS 672
Query: 432 SEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRNYIEVWAALDDEC 596
+E+ NF D+ TDT++ + K W E ++T+ IE L C
Sbjct: 673 NELH-NFEDSSTDTLEKGRPNPSKGDLKLRARWVEVNKVQTQALIETEKFLQKTC 726
>AE014297-2908|AAF55834.2| 4496|Drosophila melanogaster CG3723-PA
protein.
Length = 4496
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 186 IHSSTGLFIKMYMEKENEYAYSVLENKGYAINIYTK---HSSEAISQEEFQRL 335
+H+S K+Y++ E Y Y+ ++ IN+Y K H +E + Q + +RL
Sbjct: 3027 VHTSVNTTSKVYLQNERRYNYTTPKSYLEQINLYIKLLNHKNEDL-QSKIERL 3078
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,999,004
Number of Sequences: 53049
Number of extensions: 491118
Number of successful extensions: 1299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2682985500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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