Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D15
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    54   2e-08
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    28   1.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   1.8  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   2.3  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   4.1  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    26   5.4  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   7.2  

>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
 Frame = +1

Query: 94  LRKTVTGLIKFEXIXLNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEKQ-LV 270
           LR  VT L+K E I     +  EA+++AE+LI+ A +  +       +A   + EK+  +
Sbjct: 21  LRNLVTSLVKHESIQTTWAKAKEAQRFAEKLITMA-KRANPQNNRKGLAEGMVFEKETTL 79

Query: 271 HKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNP 402
            K+F VLVPR+      YT+++K P  ++T++    VLE    P
Sbjct: 80  KKVFDVLVPRYNGRRCGYTRLLKLP-PRSTDNAPMGVLEFVDGP 122


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 539 LNWVSLPIFAAISEIFDCL*SYFAASSNTF*IHNLLFGCLTIK-SGYGL 396
           L  V +P+ + +S+      ++F +S     +H L+ GC+T+K  GYGL
Sbjct: 381 LRHVYVPLNSFMSKSLSTFFTFFVSSV----LHELVMGCITLKIRGYGL 425


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 139 LNINRGDEARQYAERLISEAIRH 207
           LNIN  +E   YAER + E I+H
Sbjct: 513 LNINVPNEEGDYAERAVPEQIKH 535


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 372 ICMFSILSFRCFNHFCIRNCRVFKSWN 292
           IC F+ +S    NH C  NCR F + N
Sbjct: 89  ICEFNAVSNSQANHPCCSNCRAFINSN 115


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = +2

Query: 191 QKLSVMVTVTNQLWTWPIFGF----LKNSLF--INYSKFWFQDLKTRQFLIQK*LKHLKL 352
           Q L +M  +    W   IF F     ++ LF  + Y+ FW   L+T+    QK   H K+
Sbjct: 294 QMLYIMYNIVWISWNCGIFSFPRGITQSQLFELMQYTGFWLVQLRTKPLTSQKPDWHYKM 353


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 209 VTVTNQLWTWPIFGFLKNSLFINYSKFWFQDLKTRQF 319
           + +   L+ W +F FLKN+ +I +     Q L  + F
Sbjct: 437 ICIVTDLFGWSVFDFLKNNNYIPFPLKHIQMLSQQLF 473


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 369 CMFSILSFRCFNHFCIRNCRVFK 301
           C   IL+ RCFN   + +C + K
Sbjct: 88  CHAEILALRCFNRLLLEHCILIK 110


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1009

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = +1

Query: 415  IVKQPNNR--LWIQNVLLDAAKYDYRQSKISEIAANIGKDTQL------SSSSLTANNK 567
            I + PN +  +W Q   L+A  + Y + +I  I  ++G+D  +       S+S+ A NK
Sbjct: 935  ISQYPNLKEIIWCQEEPLNAGAWTYMEPRIYTILKHLGRDLPVRYAGRPPSASVAAGNK 993


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,516
Number of Sequences: 5004
Number of extensions: 44951
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)