Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D15
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1286 + 36000741-36000796,36000885-36000939,36001036-360010...    38   0.005
05_05_0113 - 22485243-22485500,22485847-22486009,22486138-224862...    36   0.037
07_01_1214 - 11583510-11583653,11585063-11585148,11585234-115853...    30   1.8  
06_02_0031 + 10769375-10769785                                         29   4.2  
10_07_0152 + 13439178-13439517,13440072-13440229,13440431-134404...    28   7.4  
02_02_0344 + 9182775-9183539,9195912-9196028                           27   9.8  

>01_06_1286 +
           36000741-36000796,36000885-36000939,36001036-36001086,
           36001962-36002053,36002301-36002378,36002778-36002931
          Length = 161

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 23/86 (26%), Positives = 44/86 (51%)
 Frame = +1

Query: 82  RLXKLRKTVTGLIKFEXIXLNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEK 261
           R+  LR  V+ L+K E I   + +  E R+ A++++    + G         A+ ++   
Sbjct: 14  RVSMLRTMVSQLVKHERIETTVAKAKEVRRKADQMVQLG-KEGTLDAARR--ASAFVRGD 70

Query: 262 QLVHKLFKVLVPRFENSTVSYTKMIK 339
            +VHKLF  L  R++N    YT++++
Sbjct: 71  DVVHKLFTELAYRYKNRAGGYTRLLR 96


>05_05_0113 -
           22485243-22485500,22485847-22486009,22486138-22486229,
           22486832-22486882,22487013-22487067,22487207-22487262
          Length = 224

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 22/86 (25%), Positives = 43/86 (50%)
 Frame = +1

Query: 82  RLXKLRKTVTGLIKFEXIXLNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEK 261
           R+  LR  V+ L+K E I   + +  E R  A++++    + G         A+ ++   
Sbjct: 14  RVSMLRTMVSQLVKHERIETTVAKAKEVRTKADQMVQLG-KEGTLDAARR--ASAFVRGD 70

Query: 262 QLVHKLFKVLVPRFENSTVSYTKMIK 339
            +VHKLF  L  R+++    YT++++
Sbjct: 71  NVVHKLFTELAYRYKDRAGGYTRLLR 96


>07_01_1214 -
           11583510-11583653,11585063-11585148,11585234-11585316,
           11585415-11585572,11587083-11587243,11588058-11588279,
           11588553-11588677,11589538-11589656,11589961-11590020,
           11590292-11590370,11591936-11592100,11592632-11592660,
           11593439-11593500,11594724-11594859,11594999-11595161,
           11595245-11595384,11597811-11597899,11598914-11599001,
           11599558-11599658,11599711-11599859,11600769-11600870,
           11601888-11601973,11602064-11602309
          Length = 930

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 208 GDCHKPTMDMANFWLLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHT 369
           G C  P   +A+ WL +  ++H L +V V     S+  +     APK    +HT
Sbjct: 664 GWCFGPVTPIASRWLAKTSILHGLLQVTVVGLAISSQLFPYSTGAPKRVVLQHT 717


>06_02_0031 + 10769375-10769785
          Length = 136

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 194 SDISLSAYWRASSPRLIFNXXXSNFIXPVTVLRNLXSLPXGPL 66
           SD+S  A W  S P  +       F+ P+     L SLP  P+
Sbjct: 15  SDLSAQAPWYRSYPLFLAFSVIPRFLAPLLASAELISLPSSPI 57


>10_07_0152 +
           13439178-13439517,13440072-13440229,13440431-13440477,
           13441115-13441178,13441600-13442237,13442328-13442562
          Length = 493

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 273 MNKLFFKKPKIGHVHSWFVTVTMTDSF 193
           + KL F K  +  + SWFV   M D+F
Sbjct: 441 IQKLVFSKVDVAELDSWFVRGNMVDAF 467


>02_02_0344 + 9182775-9183539,9195912-9196028
          Length = 293

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 262 QLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTN 372
           Q V +    L+P F  S  S  K +K+ KA    HT+
Sbjct: 246 QFVEEHTHPLIPSFPESPFSQKKSLKSSKASKASHTD 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,843
Number of Sequences: 37544
Number of extensions: 235408
Number of successful extensions: 519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)