Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D15
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33108| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_5804| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   2e-09
SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25)             29   3.3  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_3416| Best HMM Match : AWPM-19 (HMM E-Value=2.9)                    29   4.3  
SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)              28   5.7  
SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_33108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 35/114 (30%), Positives = 58/114 (50%)
 Frame = +1

Query: 97  RKTVTGLIKFEXIXLNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEKQLVHK 276
           +  +T L++ E I   + R  +  +  ER+I  A + GD      +  N WL+ K LV K
Sbjct: 28  KNLITALVQHERIETTLTRCQDLARVTERMIDLA-KQGD-----EETVNSWLMNKDLVPK 81

Query: 277 LFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQPNNR 438
           +F  L+PR+E  T  YT++ + P  + T+     ++EL GN  P L+  +   R
Sbjct: 82  VFAELLPRYEGITKGYTQVYRIP-PRKTDSAQMGIVELVGNDLPQLLPSEEELR 134


>SB_5804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 35/114 (30%), Positives = 58/114 (50%)
 Frame = +1

Query: 97  RKTVTGLIKFEXIXLNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEKQLVHK 276
           +  +T L++ E I   + R  +  +  ER+I  A + GD      +  N WL+ K LV K
Sbjct: 28  KNLITALVQHERIETTLTRCQDLARVTERMIDLA-KQGD-----EETVNSWLMNKDLVPK 81

Query: 277 LFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQPNNR 438
           +F  L+PR+E  T  YT++ + P  + T+     ++EL GN  P L+  +   R
Sbjct: 82  VFAELLPRYEGITKGYTQVYRIP-PRKTDSAQMGIVELVGNDLPQLLPSEEELR 134


>SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25)
          Length = 1137

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 400 PYPDLIVKQPNNRLWIQNVLLDAAKYDYRQSKISEIAANIGKDTQLSSSSLTANNKGGTQ 579
           P P ++   PN+    +N++L   +  Y + K S  +    K+T+ S   L  NNK    
Sbjct: 5   PSPTVMQLDPND----ENIILGIPEDKYPEDKNSSTSTTPKKETKKSKLLLGKNNKNDDD 60

Query: 580 KEES 591
           +E S
Sbjct: 61  EEHS 64


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 142  NINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEKQLVHKLFKVL 291
            N N  DE  Q   +++ EAIR  +    ++ + NFW L+  ++ + +  +
Sbjct: 2197 NFNTKDE-EQKVRKVVEEAIRRSNEASKSLHVINFWPLQANILPESYNYI 2245


>SB_3416| Best HMM Match : AWPM-19 (HMM E-Value=2.9)
          Length = 311

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 292 VPRFENSTVSYTKMIK-APKAQNTEHTNKIVLELRGNPYPDLIVKQPNNRL 441
           VP  +  T +YTK  K  P  QN   TN +   +  +PY  L+     NR+
Sbjct: 73  VPNEDYQTGTYTKPQKYGPLCQNDTQTNVLENTMFRHPYESLLAPSLKNRV 123


>SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)
          Length = 563

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +1

Query: 448 QNVLLDAAKYDYRQSKISEIAA--NIGKDTQLSSSSLTANNKGGTQKEE 588
           ++V +D  + +Y++S +S+IA   NIGK    SSS  +  +  GT+K+E
Sbjct: 312 ESVQIDERRVEYQRS-LSQIAPHNNIGKVDDGSSSVRSLIDNDGTEKKE 359


>SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +1

Query: 361 EHTNKIVLELRGNPYPDLIVKQPNNRLWIQNVLLDAAKYDYRQSKIS------EIAANIG 522
           EH  KI  EL G+    + +++   R   + + L  A  + R   +S         +   
Sbjct: 454 EHIKKIETELDGSKEQMMFLQETVRRECEERLELTEALSEARTQLLSLKRNPSTSLSRTS 513

Query: 523 KDTQLSSSSLTANNKGGTQKEES 591
            ++ LSS SLT +NK G +  ES
Sbjct: 514 LNSSLSSGSLTRSNKQGLESSES 536


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,784,579
Number of Sequences: 59808
Number of extensions: 298750
Number of successful extensions: 2587
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2577
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)