Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_D15
(651 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012306-1|AAH12306.1| 175|Homo sapiens mitochondrial ribosomal... 105 1e-22
AK026857-1|BAB15575.1| 175|Homo sapiens protein ( Homo sapiens ... 105 1e-22
AF164797-1|AAF80761.1| 175|Homo sapiens ribosomal protein L17 i... 105 1e-22
AF141338-1|AAG49441.1| 184|Homo sapiens LYST-interacting protei... 105 1e-22
CR457177-1|CAG33458.1| 175|Homo sapiens MRPL17 protein. 103 6e-22
AK093476-1|BAC04180.1| 696|Homo sapiens protein ( Homo sapiens ... 30 8.2
>BC012306-1|AAH12306.1| 175|Homo sapiens mitochondrial ribosomal
protein L17 protein.
Length = 175
Score = 105 bits (252), Expect = 1e-22
Identities = 56/142 (39%), Positives = 85/142 (59%)
Frame = +1
Query: 70 GPXGRLXKLRKTVTGLIKFEXIXLNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 249
GP R+ LR +TGL++ E I R DE R YAE+LI + GD ++ M MA+FW
Sbjct: 21 GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79
Query: 250 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 429
L EK L+ KLF+VL PR+++ T YT+M++ P ++ + V+E +GN P L + +
Sbjct: 80 LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138
Query: 430 NNRLWIQNVLLDAAKYDYRQSK 495
++ L + N LL + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160
>AK026857-1|BAB15575.1| 175|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23204 fis, clone ADSE00191. ).
Length = 175
Score = 105 bits (252), Expect = 1e-22
Identities = 56/142 (39%), Positives = 85/142 (59%)
Frame = +1
Query: 70 GPXGRLXKLRKTVTGLIKFEXIXLNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 249
GP R+ LR +TGL++ E I R DE R YAE+LI + GD ++ M MA+FW
Sbjct: 21 GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79
Query: 250 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 429
L EK L+ KLF+VL PR+++ T YT+M++ P ++ + V+E +GN P L + +
Sbjct: 80 LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138
Query: 430 NNRLWIQNVLLDAAKYDYRQSK 495
++ L + N LL + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160
>AF164797-1|AAF80761.1| 175|Homo sapiens ribosomal protein L17
isolog protein.
Length = 175
Score = 105 bits (252), Expect = 1e-22
Identities = 56/142 (39%), Positives = 85/142 (59%)
Frame = +1
Query: 70 GPXGRLXKLRKTVTGLIKFEXIXLNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 249
GP R+ LR +TGL++ E I R DE R YAE+LI + GD ++ M MA+FW
Sbjct: 21 GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79
Query: 250 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 429
L EK L+ KLF+VL PR+++ T YT+M++ P ++ + V+E +GN P L + +
Sbjct: 80 LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138
Query: 430 NNRLWIQNVLLDAAKYDYRQSK 495
++ L + N LL + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160
>AF141338-1|AAG49441.1| 184|Homo sapiens LYST-interacting protein
LIP2 protein.
Length = 184
Score = 105 bits (252), Expect = 1e-22
Identities = 56/142 (39%), Positives = 85/142 (59%)
Frame = +1
Query: 70 GPXGRLXKLRKTVTGLIKFEXIXLNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 249
GP R+ LR +TGL++ E I R DE R YAE+LI + GD ++ M MA+FW
Sbjct: 30 GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 88
Query: 250 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 429
L EK L+ KLF+VL PR+++ T YT+M++ P ++ + V+E +GN P L + +
Sbjct: 89 LTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 147
Query: 430 NNRLWIQNVLLDAAKYDYRQSK 495
++ L + N LL + D RQS+
Sbjct: 148 DSHLTLLNQLLQGLRQDLRQSQ 169
>CR457177-1|CAG33458.1| 175|Homo sapiens MRPL17 protein.
Length = 175
Score = 103 bits (247), Expect = 6e-22
Identities = 55/142 (38%), Positives = 84/142 (59%)
Frame = +1
Query: 70 GPXGRLXKLRKTVTGLIKFEXIXLNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFW 249
GP R+ LR +TGL++ E I R DE R YAE+LI + GD ++ M MA+FW
Sbjct: 21 GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYG-KLGDTNERAMRMADFW 79
Query: 250 LLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQP 429
L EK L+ KLF+VL PR+++ T Y +M++ P ++ + V+E +GN P L + +
Sbjct: 80 LTEKDLIPKLFQVLAPRYKDQTGGYARMLQIPN-RSLDRAKMAVIEYKGNCLPPLPLPRR 138
Query: 430 NNRLWIQNVLLDAAKYDYRQSK 495
++ L + N LL + D RQS+
Sbjct: 139 DSHLTLLNQLLQGLRQDLRQSQ 160
>AK093476-1|BAC04180.1| 696|Homo sapiens protein ( Homo sapiens
cDNA FLJ36157 fis, clone TESTI2025656. ).
Length = 696
Score = 29.9 bits (64), Expect = 8.2
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +1
Query: 355 NTEHTNKIVLELRGNPYPDLIVKQPNNRLWIQNVLLDAAKYDYRQ--SKISEIAANIGKD 528
NTE ++K L+ N + +P + + ++ D K + + SE+ +N +D
Sbjct: 556 NTESSSKEKLDSNSNCLSSVSAVEPTLMVIKEPIIKDDKKIKSEELSRRGSEVISNTTED 615
Query: 529 TQLSS--SSLTANNK 567
TQL+S SLT N K
Sbjct: 616 TQLTSETQSLTGNKK 630
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,997,887
Number of Sequences: 237096
Number of extensions: 1346819
Number of successful extensions: 2365
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2355
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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