Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D15
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-4|AAF60758.2|  194|Caenorhabditis elegans Hypothetical ...    77   1e-14
U23147-5|AAC46686.2|  308|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC024810-4|AAF60758.2|  194|Caenorhabditis elegans Hypothetical
           protein Y54E10A.7 protein.
          Length = 194

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
 Frame = +1

Query: 82  RLXKLRKTVTGLIKFEXIXLNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEK 261
           RL  LR+ VT  ++ E   L  NR  EAR Y ERLI   +  G   + T +M  +WL EK
Sbjct: 36  RLEVLRRIVTRTVREERAELKWNRAVEARPYLERLIQLGVERGPLDEYTAEMMEWWLPEK 95

Query: 262 QLVHKLFKVLVPRFENSTVSYTKMIKAPK------AQNTEHTNKI----VLELRGNPYPD 411
            L+ K+ +V+VPRF++    +T + + P        QN     K     VLE+ GNP+P 
Sbjct: 96  DLITKMHEVIVPRFQDRDSPFTSLFRLPPQRLQQFIQNKREVWKRYDIGVLEIDGNPFPQ 155

Query: 412 LIVKQPNNRLWIQNVLLDAAKYDYRQS 492
           +   + +    I +VLL  A  +++++
Sbjct: 156 IQADRVDQSESILDVLLADALRNHQKN 182


>U23147-5|AAC46686.2|  308|Caenorhabditis elegans Hypothetical
           protein C18H9.1 protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 25/101 (24%), Positives = 40/101 (39%)
 Frame = +1

Query: 283 KVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQPNNRLWIQNVLL 462
           +V +P  E ++ SY K  K PKA     +        G  +P LI      R    N  +
Sbjct: 153 RVTLPESEITSQSYRKYPKKPKAIGKVGSTGGNRNGMGAIHPTLISYPEEQRK--TNSRV 210

Query: 463 DAAKYDYRQSKISEIAANIGKDTQLSSSSLTANNKGGTQKE 585
              + +Y    I  I  NIG   +++ +     N+GG   +
Sbjct: 211 KNNRSNYHIGNIGNIGGNIGNGQKMNRNKNGGRNQGGNHPD 251


>AF038615-5|AAB94142.1|  934|Caenorhabditis elegans Hypothetical
           protein R02D3.1 protein.
          Length = 934

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 197 ASDISLSAYWRASSPRLIFNXXXSNFIXPV 108
           AS I    YW A SPRLI      N + PV
Sbjct: 309 ASVIINGVYWDAQSPRLITIPDAKNLLTPV 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,358,615
Number of Sequences: 27780
Number of extensions: 242323
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)