Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D14
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)                    31   0.84 
SB_6028| Best HMM Match : LIM (HMM E-Value=0.22)                       30   1.9  
SB_48023| Best HMM Match : Sulfotransfer_1 (HMM E-Value=2.4e-07)       30   2.6  
SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       28   7.8  
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)                      28   7.8  

>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 999

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 93  LADXFSQXTAVVTSQCTKNNAEDKV-PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNG 269
           L    S    +  + CT++N  D++  E  A  +   + L   +     K   ++A P G
Sbjct: 314 LEKIISGAARLADADCTRDNTRDRIIAECNAVRQALQDLLSEYMSHAGGK---KKAVPGG 370

Query: 270 ALDEVFKKYCDKSAQLKG 323
            LD+  +K C K++ L+G
Sbjct: 371 PLDKAIEKMCSKTSGLRG 388


>SB_6028| Best HMM Match : LIM (HMM E-Value=0.22)
          Length = 968

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 620 EIPRRVFHTDTRKHGGITDQVHAQRLSLPHRSAQDRLIAPSDFFPLILXPSQ 775
           + PRR+F  D    G IT+ V+     + H +   R+I P D  P  L P++
Sbjct: 785 QTPRRLFIIDHSLEGWITNAVYTGISRVRHANQIVRVIPPPDNTPGALAPTE 836


>SB_48023| Best HMM Match : Sulfotransfer_1 (HMM E-Value=2.4e-07)
          Length = 417

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 605 DLLYREIPRRVFHTDTRKHGGITDQVHAQRLSLPHRSAQDRLIAP 739
           D +   +   +FH D R+    TD +  Q  SL HR A   L AP
Sbjct: 142 DTMVTHLLNGIFHCDFRELSYFTDFISLQYSSLSHRLASRALSAP 186


>SB_56697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 432 YKDGDRIALFIAEGGPECFQQKTENLKTCFLNLKQSFPTVESANNLS 572
           Y  G +I  F+A+   +C  + TENL+    N +    T E+A  LS
Sbjct: 46  YLHGFKIESFVAQNPFDCSIKCTENLRCQSFNYQSESSTSENACELS 92


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 691 KTLLATPLCPRQTDCTVGLLSVNTXAITKLMTFESF 798
           KTL+    CP +  CTV L   N+  +TK+     F
Sbjct: 726 KTLMYLEGCPTELGCTVTLRGGNSFVLTKIKKIMQF 761


>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
          Length = 1243

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 274 SAPFGLASSISVFRTFKSTSPLRQFP 197
           S PFG+ S+ S+ + F S + L++FP
Sbjct: 458 SLPFGIQSASSLVKLFLSNNKLKEFP 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,533,380
Number of Sequences: 59808
Number of extensions: 494298
Number of successful extensions: 1344
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)