Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_D13
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 29 0.55
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 27 2.2
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 27 2.9
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 27 2.9
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.9
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.1
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce... 26 6.8
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe... 26 6.8
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 9.0
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.0
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 25 9.0
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 29.5 bits (63), Expect = 0.55
Identities = 37/155 (23%), Positives = 68/155 (43%)
Frame = -2
Query: 700 VTVSLCNVCSSTFSSSQSYWLTSKADLSNPVLKLK*SQISCFSKSPNSSL*FLTSYLTGC 521
VT+S +ST S S TS + +++P SQIS S SP+S+ F S
Sbjct: 121 VTLSCGQAFTSTVDISSS---TSSSVINSPTGTAVSSQISTLSMSPSSTPVFSPSASVSS 177
Query: 520 QLLFFSS*VAQIVFIVLVSKSLSSATNLIVFSTVCESGPTYSKLSVSGKIIFKSNILSSD 341
++ + + ++ SS+TN ++ +T S P S S + + +I S++
Sbjct: 178 KV------ASSVSYVSSEPSDSSSSTNTVILTTSVNS-PAVS----SSETLTSVSITSTE 226
Query: 340 PSITLHLKIASSPSSVSGWISYETPYLYFAFSSTI 236
+ T ++ ++ S + T +FS+ I
Sbjct: 227 SAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDI 261
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 378 PETDNFEYVGPDSQTVENTIKFVAEDSDLETKTIKTIWATYDEK 509
P NFE PD + + T A D++L KT + I + D K
Sbjct: 35 PSKKNFETQSPDEPSPKTTDSTGARDANLSLKTQEPIVSADDAK 78
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -2
Query: 739 CLSFSGSMNMRNLVTVSLCNVCSSTFSSSQSYWLTSKADLSNPVLKLK*SQISCFSKSPN 560
C S S S N NL T + + Q + + D NP K S+I +K P+
Sbjct: 420 CASSSSSSNSNNLSTGMSMRTLGHQYLNLQGSGVKNLHDKGNPTALSKDSEIDSSTKKPS 479
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +3
Query: 276 YEIHPETDDGEDAIFKCNVMLGSEDNIFDLKIILPETDNFEYVGPDSQTVENTIKFVAED 455
Y ++P D + + + + S+D ++ E D ++ D Q VEN +K +++D
Sbjct: 577 YLLYPSYDLPDRNLSEHSYSSSSDDEQRISELNDRELDEIDWQAAD-QDVENALKDLSDD 635
Query: 456 SDLETKTI 479
+D +T +I
Sbjct: 636 NDFDTGSI 643
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 325 HLKIASSPSSVSGWISYETPYLYFAFSSTIILFTAPLL 212
HL A PS +SG+I TP++Y+ F T + LL
Sbjct: 292 HLGTALGPS-LSGFIVQYTPHMYYVFYITSTFWIIYLL 328
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 300 DGEDAIFKCNVMLGSEDNIFDLKIILPETDNFEY-VGPDSQTVENTIKFVAEDSDLETKT 476
D E+AI + + + N+ + K+I + + Y +GP+ ++NTIK +D +T+T
Sbjct: 937 DVENAIKEISAIAEEVKNLVE-KVIKIDREYHRYLIGPNGSKLQNTIKECGGSTD-KTET 994
Query: 477 IKTI 488
+ I
Sbjct: 995 ARLI 998
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 360 DLKIILPETDNFEYVGPDSQTVENTIKFVAEDSDLET 470
DL I P T Y+ QTV NT D D++T
Sbjct: 954 DLTTIDPTTFTSTYLSSGFQTVSNTTATSGSDDDVKT 990
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 5.1
Identities = 38/144 (26%), Positives = 55/144 (38%)
Frame = -2
Query: 697 TVSLCNVCSSTFSSSQSYWLTSKADLSNPVLKLK*SQISCFSKSPNSSL*FLTSYLTGCQ 518
TVS +V S+T SSS S +S + S S S S +SS +S +
Sbjct: 126 TVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185
Query: 517 LLFFSS*VAQIVFIVLVSKSLSSATNLIVFSTVCESGPTYSKLSVSGKIIFKSNILSSDP 338
SS + S S S S+ S + S S S + S+ +++
Sbjct: 186 SSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMS 245
Query: 337 SITLHLKIASSPSSVSGWISYETP 266
S T + +PSS S S E P
Sbjct: 246 SSTFISTVTVTPSSSSSSTSSEVP 269
>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 667 TFSSSQSYWLTSKADLSNP 611
TFS W+ ++ADLSNP
Sbjct: 210 TFSDMFHGWMAARADLSNP 228
>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -2
Query: 283 ISYETPYLYFAFSSTIILFTAPLL*STRDE*FVFHTE*SCTLPALIDIL 137
I+ E+ LY+A+ + I +++ L + + FHT + P ++DI+
Sbjct: 205 INDESSVLYWAYKNNIPIYSPALTDGSIGDMLYFHTYKATPRPLVLDIV 253
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 9.0
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = -2
Query: 466 SKSLSSATNLIVFSTVCESGPTYSKL------SVSGKIIFKSNILSSDPSITLHLK--IA 311
S S +L+ FST PTYS + S S + + K NILS + S + L A
Sbjct: 86 SSSFDDHQSLLPFSTEVRRTPTYSVMNETDSSSTSVEDVNKENILSLNDSCLIKLSDDEA 145
Query: 310 SSPSSVS 290
S+ SS S
Sbjct: 146 SNKSSRS 152
>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 171 YSVWKTNHSSRVDYNKGAVKSIIVDENAKY 260
Y + N +SR +NK +++D+N +Y
Sbjct: 71 YKTYSPNLTSRASWNKHFFARLMLDDNVQY 100
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 228 KSIIVDENAKYRYGVSYEIH-PETDDGE 308
KS+IVD +A YR+ S++ PE +D E
Sbjct: 663 KSVIVDLSADYRFEPSWQYGLPELNDRE 690
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,344
Number of Sequences: 5004
Number of extensions: 66451
Number of successful extensions: 226
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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