Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D13
         (764 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L00352-1|AAA56833.1|  860|Homo sapiens low density lipoprotein r...    30   7.9  
BT007361-1|AAP36025.1|  860|Homo sapiens low density lipoprotein...    30   7.9  
BC014514-1|AAH14514.1|  860|Homo sapiens low density lipoprotein...    30   7.9  
AY324609-1|AAP72971.1|  860|Homo sapiens low density lipoprotein...    30   7.9  
AY114155-1|AAM56036.1|  860|Homo sapiens low density lipoprotein...    30   7.9  
AJ291390-1|CAC19572.1|  901|Homo sapiens MUC3B mucin protein.          30   7.9  
AF217403-1|AAF24515.1|  837|Homo sapiens low density lipoprotein...    30   7.9  
AB209409-1|BAD92646.1|  870|Homo sapiens low density lipoprotein...    30   7.9  
AB038783-1|BAB12117.1|  878|Homo sapiens intestinal mucin protein.     30   7.9  
AB038781-1|BAB12115.1|  878|Homo sapiens intestinal mucin protein.     30   7.9  

>L00352-1|AAA56833.1|  860|Homo sapiens low density lipoprotein
           receptor protein.
          Length = 860

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 183 KTNHSSRVDYNKGAVKSIIVDENAKYRYGVSYEIHPE----TDDGEDAIFKCNVMLGSED 350
           K +  S +D N G  K+I+ DE  +  +  S  +  +    TD   +AIF  N + GS+ 
Sbjct: 581 KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 639

Query: 351 NIFDLKIILPE 383
           N+    ++ PE
Sbjct: 640 NLLAENLLSPE 650


>BT007361-1|AAP36025.1|  860|Homo sapiens low density lipoprotein
           receptor (familial hypercholesterolemia) protein.
          Length = 860

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 183 KTNHSSRVDYNKGAVKSIIVDENAKYRYGVSYEIHPE----TDDGEDAIFKCNVMLGSED 350
           K +  S +D N G  K+I+ DE  +  +  S  +  +    TD   +AIF  N + GS+ 
Sbjct: 581 KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 639

Query: 351 NIFDLKIILPE 383
           N+    ++ PE
Sbjct: 640 NLLAENLLSPE 650


>BC014514-1|AAH14514.1|  860|Homo sapiens low density lipoprotein
           receptor (familial hypercholesterolemia) protein.
          Length = 860

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 183 KTNHSSRVDYNKGAVKSIIVDENAKYRYGVSYEIHPE----TDDGEDAIFKCNVMLGSED 350
           K +  S +D N G  K+I+ DE  +  +  S  +  +    TD   +AIF  N + GS+ 
Sbjct: 581 KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 639

Query: 351 NIFDLKIILPE 383
           N+    ++ PE
Sbjct: 640 NLLAENLLSPE 650


>AY324609-1|AAP72971.1|  860|Homo sapiens low density lipoprotein
           receptor protein.
          Length = 860

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 183 KTNHSSRVDYNKGAVKSIIVDENAKYRYGVSYEIHPE----TDDGEDAIFKCNVMLGSED 350
           K +  S +D N G  K+I+ DE  +  +  S  +  +    TD   +AIF  N + GS+ 
Sbjct: 581 KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 639

Query: 351 NIFDLKIILPE 383
           N+    ++ PE
Sbjct: 640 NLLAENLLSPE 650


>AY114155-1|AAM56036.1|  860|Homo sapiens low density lipoprotein
           receptor protein.
          Length = 860

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 183 KTNHSSRVDYNKGAVKSIIVDENAKYRYGVSYEIHPE----TDDGEDAIFKCNVMLGSED 350
           K +  S +D N G  K+I+ DE  +  +  S  +  +    TD   +AIF  N + GS+ 
Sbjct: 581 KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 639

Query: 351 NIFDLKIILPE 383
           N+    ++ PE
Sbjct: 640 NLLAENLLSPE 650


>AJ291390-1|CAC19572.1|  901|Homo sapiens MUC3B mucin protein.
          Length = 901

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = -2

Query: 529 TGCQLLFFSS*VAQIVFIVLVSKSLSSATNLIVFSTVCESGPTYSKLSVSGKIIFKSNIL 350
           T   L  FS+ +      +++S S SSA+   VF+T   S P+ S    S + +  ++I 
Sbjct: 248 TNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTIHSVPS-SPYIFSTENVGSASI- 305

Query: 349 SSDPSITLHLKIASSP--SSVSGWISYETPYLYFAFSST 239
           ++ PS++     ++SP  SS++  ++  TP+ Y +  ST
Sbjct: 306 TAFPSLSSSSTTSTSPTSSSLTTALTEITPFSYISLPST 344


>AF217403-1|AAF24515.1|  837|Homo sapiens low density lipoprotein
           receptor protein.
          Length = 837

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 183 KTNHSSRVDYNKGAVKSIIVDENAKYRYGVSYEIHPE----TDDGEDAIFKCNVMLGSED 350
           K +  S +D N G  K+I+ DE  +  +  S  +  +    TD   +AIF  N + GS+ 
Sbjct: 558 KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 616

Query: 351 NIFDLKIILPE 383
           N+    ++ PE
Sbjct: 617 NLLAENLLSPE 627


>AB209409-1|BAD92646.1|  870|Homo sapiens low density lipoprotein
           receptor precursor variant protein.
          Length = 870

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 183 KTNHSSRVDYNKGAVKSIIVDENAKYRYGVSYEIHPE----TDDGEDAIFKCNVMLGSED 350
           K +  S +D N G  K+I+ DE  +  +  S  +  +    TD   +AIF  N + GS+ 
Sbjct: 593 KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 651

Query: 351 NIFDLKIILPE 383
           N+    ++ PE
Sbjct: 652 NLLAENLLSPE 662


>AB038783-1|BAB12117.1|  878|Homo sapiens intestinal mucin protein.
          Length = 878

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = -2

Query: 529 TGCQLLFFSS*VAQIVFIVLVSKSLSSATNLIVFSTVCESGPTYSKLSVSGKIIFKSNIL 350
           T   L  FS+ +      +++S S SSA+   VF+T   S P+ S    S + +  ++I 
Sbjct: 225 TNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTIHSVPS-SPYIFSTENVGSASI- 282

Query: 349 SSDPSITLHLKIASSP--SSVSGWISYETPYLYFAFSST 239
           ++ PS++     ++SP  SS++  ++  TP+ Y +  ST
Sbjct: 283 TAFPSLSSSSTTSTSPTSSSLTTALTEITPFSYISLPST 321


>AB038781-1|BAB12115.1|  878|Homo sapiens intestinal mucin protein.
          Length = 878

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = -2

Query: 529 TGCQLLFFSS*VAQIVFIVLVSKSLSSATNLIVFSTVCESGPTYSKLSVSGKIIFKSNIL 350
           T   L  FS+ +      +++S S SSA+   VF+T   S P+ S    S + +  ++I 
Sbjct: 225 TNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTIHSVPS-SPYIFSTENVGSASI- 282

Query: 349 SSDPSITLHLKIASSP--SSVSGWISYETPYLYFAFSST 239
           ++ PS++     ++SP  SS++  ++  TP+ Y +  ST
Sbjct: 283 TAFPSLSSSSTTSTSPTSSSLTTALTEITPFSYISLPST 321


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,590,522
Number of Sequences: 237096
Number of extensions: 2032455
Number of successful extensions: 8918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8903
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)