Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D12
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    47   2e-06
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    44   9e-06
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    43   3e-05
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   7.5  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +2

Query: 137 TGXXISTILKAAAVXVXPYWPGLFAKALEGINVRDLITNIGSG 265
           T   + ++ KAA V V P W  +FAKALEG ++++L+ NIGSG
Sbjct: 23  TSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSG 65


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 44.4 bits (100), Expect = 9e-06
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = +2

Query: 137 TGXXISTILKAAAVXVXPYWPGLFAKALEGINVRDLITNIGS 262
           T   + ++ KAA V V P W  +FAKALEG ++++L+ NIGS
Sbjct: 23  TSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGS 64


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 19/42 (45%), Positives = 28/42 (66%)
 Frame = +2

Query: 137 TGXXISTILKAAAVXVXPYWPGLFAKALEGINVRDLITNIGS 262
           T   + ++ KA  V V P W  +FAKALEG ++++L+ NIGS
Sbjct: 23  TSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGS 64


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 242 GHGH*CLPRLWRTDL 198
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 922,482
Number of Sequences: 5004
Number of extensions: 11252
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)