Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D12
         (465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        29   2.5  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 27/65 (41%), Positives = 36/65 (55%)
 Frame = +2

Query: 68  MVSKAXFACXXXXXXXXXXXXXXTGXXISTILKAAAVXVXPYWPGLFAKALEGINVRDLI 247
           M S +  AC              T   I T++KAA + V P+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 248 TNIGS 262
            + G+
Sbjct: 61  LSAGA 65


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 247 DQVTDIDAFQGFGEQTWPIWXYXYSRRFQ 161
           DQ+  I+ F+  G++ WP +    S R +
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLK 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,442,455
Number of Sequences: 59808
Number of extensions: 92268
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)