Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D12
         (465 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    59   6e-09
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                59   6e-09
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    59   6e-09
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    59   6e-09
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    59   6e-09
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    59   6e-09
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                54   3e-07

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 59.3 bits (137), Expect = 6e-09
 Identities = 27/66 (40%), Positives = 36/66 (54%)
 Frame = +2

Query: 68  MVSKAXFACXXXXXXXXXXXXXXTGXXISTILKAAAVXVXPYWPGLFAKALEGINVRDLI 247
           M S +  AC              T   I+ ++KAA V V P+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 248 TNIGSG 265
            N+G+G
Sbjct: 61  CNVGAG 66


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 59.3 bits (137), Expect = 6e-09
 Identities = 27/66 (40%), Positives = 36/66 (54%)
 Frame = +2

Query: 68  MVSKAXFACXXXXXXXXXXXXXXTGXXISTILKAAAVXVXPYWPGLFAKALEGINVRDLI 247
           M S +  AC              T   I+ ++KAA V V P+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 248 TNIGSG 265
            N+G+G
Sbjct: 61  CNVGAG 66


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 59.3 bits (137), Expect = 6e-09
 Identities = 27/66 (40%), Positives = 36/66 (54%)
 Frame = +2

Query: 68  MVSKAXFACXXXXXXXXXXXXXXTGXXISTILKAAAVXVXPYWPGLFAKALEGINVRDLI 247
           M S +  AC              T   I+ ++KAA V V P+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 248 TNIGSG 265
            N+G+G
Sbjct: 61  CNVGAG 66


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 59.3 bits (137), Expect = 6e-09
 Identities = 27/66 (40%), Positives = 36/66 (54%)
 Frame = +2

Query: 68  MVSKAXFACXXXXXXXXXXXXXXTGXXISTILKAAAVXVXPYWPGLFAKALEGINVRDLI 247
           M S +  AC              T   I+ ++KAA V V P+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 248 TNIGSG 265
            N+G+G
Sbjct: 61  CNVGAG 66


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 59.3 bits (137), Expect = 6e-09
 Identities = 27/66 (40%), Positives = 36/66 (54%)
 Frame = +2

Query: 68  MVSKAXFACXXXXXXXXXXXXXXTGXXISTILKAAAVXVXPYWPGLFAKALEGINVRDLI 247
           M S +  AC              T   I+ ++KAA V V P+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 248 TNIGSG 265
            N+G+G
Sbjct: 61  CNVGAG 66


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 59.3 bits (137), Expect = 6e-09
 Identities = 27/66 (40%), Positives = 36/66 (54%)
 Frame = +2

Query: 68  MVSKAXFACXXXXXXXXXXXXXXTGXXISTILKAAAVXVXPYWPGLFAKALEGINVRDLI 247
           M S +  AC              T   I+ ++KAA V V P+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 248 TNIGSG 265
            N+G+G
Sbjct: 61  CNVGAG 66


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 22/43 (51%), Positives = 31/43 (72%)
 Frame = +2

Query: 137 TGXXISTILKAAAVXVXPYWPGLFAKALEGINVRDLITNIGSG 265
           T   I+ ++KAA V V P+WPGLFAKAL  +N+  LI ++G+G
Sbjct: 24  TEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICDVGAG 66


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,464,632
Number of Sequences: 237096
Number of extensions: 479034
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)