Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D11
         (444 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000049A04F Cluster: hypothetical protein 276.t00007;...    33   2.8  
UniRef50_Q241C6 Cluster: Phage head-tail adaptor, putative famil...    33   3.7  
UniRef50_Q6ZQV8 Cluster: CDNA FLJ46861 fis, clone UTERU3011092; ...    32   6.4  

>UniRef50_UPI000049A04F Cluster: hypothetical protein 276.t00007;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 276.t00007 - Entamoeba histolytica HM-1:IMSS
          Length = 975

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 24/73 (32%), Positives = 39/73 (53%)
 Frame = -3

Query: 334 NILSFYSALQCIENEEQMNMQVLILTTL*FKQ*KYNQSXXXXXXXXXISQYISYYIFYMN 155
           N+ SFYS+LQ I+++E +N  +++L    F     N+S            Y+SYYI  +N
Sbjct: 815 NLTSFYSSLQTIKSQESINSFLMLLPFQSFS----NKSLIDT--------YLSYYIKLLN 862

Query: 154 LSTITNFYFKRIN 116
           +S    F  ++IN
Sbjct: 863 VSIERVFSSEKIN 875


>UniRef50_Q241C6 Cluster: Phage head-tail adaptor, putative family
           protein; n=1; Tetrahymena thermophila SB210|Rep: Phage
           head-tail adaptor, putative family protein - Tetrahymena
           thermophila SB210
          Length = 1234

 Score = 32.7 bits (71), Expect = 3.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 186 CDILSFNLIHIRL*LYFYCLNYNVVKINTCIFICSSFSMHCN 311
           C+I   + +     LYFY L   ++ ++ C+F+C  F++  N
Sbjct: 167 CNIYELSFLGCGFPLYFYFLKQCMIMLSICLFVCGIFNIITN 208


>UniRef50_Q6ZQV8 Cluster: CDNA FLJ46861 fis, clone UTERU3011092;
           n=3; Homo sapiens|Rep: CDNA FLJ46861 fis, clone
           UTERU3011092 - Homo sapiens (Human)
          Length = 291

 Score = 31.9 bits (69), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 180 IYCDILSFNLIHIRL*LYFYCLNYNVVKINTCIFICS 290
           IY  + ++  IH+    Y Y  +Y  + I+ CIFIC+
Sbjct: 93  IYTHMHTYMYIHMHAYAYIYVYSYTRICIHICIFICT 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 305,051,243
Number of Sequences: 1657284
Number of extensions: 4411156
Number of successful extensions: 7963
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7962
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)