Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D09
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              62   2e-10
SB_30340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               27   6.6  

>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 23/56 (41%), Positives = 36/56 (64%)
 Frame = +1

Query: 88  LVXPQQSLRXACSQKPDAQNMWAKYQXCNDRVNSRSKTAETCEEELIDYVHVLDKC 255
           LV P  ++R +C +KP+   +  +   C +RVNS+S T ETC +EL+D++H  D C
Sbjct: 372 LVDPMDAIRESCEEKPECSKLKLELSNCEERVNSKSSTTETCAQELLDFMHCRDHC 427


>SB_30340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 109 LRXACSQKPDAQNMWAKYQXCNDRVNSRSKTAETCEEELI 228
           ++  C +KP    MW +Y+   D++ SR +      +E I
Sbjct: 33  IKCECCRKPLVYYMWYRYERFEDKMKSRERYENEGNQEKI 72


>SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -1

Query: 267 VLGDAFVKNMDIVNEFFFTGFCSFRSGVYTIIAXLIFSPHVLGIRLL 127
           +LG +FV  +  +N  +F   C  + GVYT+I  L +   +LG+ ++
Sbjct: 516 LLGVSFV--VPHINNLYFLTLCR-KYGVYTVIKWLFYVKLLLGLSMM 559


>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 270 QVLGDAFVKNMDIVNEFFFTGFCSFRS-GVYTIIAXLIFSPHV 145
           Q + ++FV+N +IVN+ FF       S   + +++ L+  PH+
Sbjct: 47  QHIDESFVENEEIVNDIFFAQQVIPNSCATHALLSVLLNCPHI 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,478,652
Number of Sequences: 59808
Number of extensions: 181824
Number of successful extensions: 330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)