Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D09
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-1|CAB04873.1|   75|Caenorhabditis elegans Hypothetical pr...    56   1e-08
U41556-2|ABS19475.1|  369|Caenorhabditis elegans Cysteine protea...    29   2.5  
AC006730-3|ABO16463.1|  365|Caenorhabditis elegans Hypothetical ...    28   3.3  

>Z82059-1|CAB04873.1|   75|Caenorhabditis elegans Hypothetical
           protein T27E9.2 protein.
          Length = 75

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 24/39 (61%), Positives = 26/39 (66%)
 Frame = +1

Query: 169 CNDRVNSRSKTAETCEEELIDYVHVLDKCVTKDLFKRLK 285
           CNDRVNSRS T ETC +E+ DYVH LD C     F  LK
Sbjct: 37  CNDRVNSRSNTEETCHQEMADYVHHLDHCAMPKAFASLK 75


>U41556-2|ABS19475.1|  369|Caenorhabditis elegans Cysteine protease
           related protein6, isoform c protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 154 AKYQXCNDRVNSRSKTAETCEEELIDYVH 240
           A Y  CND + S  + AE   ++LIDYV+
Sbjct: 13  AAYCACNDNLESVLEAAELDGDDLIDYVN 41


>AC006730-3|ABO16463.1|  365|Caenorhabditis elegans Hypothetical
           protein Y27F2A.5 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 439 TGNYL-YLQINSNNIGDSHILYINKFTKTTG 350
           TG YL YLQI+ N+I  +HILY     ++ G
Sbjct: 34  TGLYLTYLQIDQNSIQINHILYRLSVIRSNG 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,599,925
Number of Sequences: 27780
Number of extensions: 143782
Number of successful extensions: 293
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)