Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D07
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    30   2.4  
Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical pr...    29   3.2  
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr...    29   3.2  
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    28   9.6  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    28   9.6  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    28   9.6  

>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 304 RTCLDVNPNDSQHTCRVVELASNTAIA 384
           R C+ +N ND Q +CR V+L     IA
Sbjct: 221 RCCVKLNKNDKQTSCRTVDLQKQLMIA 247


>Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical
           protein T03F6.9 protein.
          Length = 138

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 415 CNKDNCNGAGSISFSLPLATFA 480
           C KD CNGAG +S    +A F+
Sbjct: 107 CGKDKCNGAGKVSTIFVVAMFS 128


>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
           protein ZK688.5b protein.
          Length = 1595

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 693 FRWGQTYENELRFTINSLEFFSVSTRLG 610
           FR  + +E  +R TIN++ F S STRLG
Sbjct: 223 FRPREHFEQVVRETINNISFLSDSTRLG 250


>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
           protein ZK688.5a protein.
          Length = 1620

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 693 FRWGQTYENELRFTINSLEFFSVSTRLG 610
           FR  + +E  +R TIN++ F S STRLG
Sbjct: 223 FRPREHFEQVVRETINNISFLSDSTRLG 250


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
 Frame = +1

Query: 82   TGXCIKCX------QCNSXQXKHCGXPFKRAKPPVXCNTQDSIN 195
            TG C+KC        C S +  H G        P  C+TQ ++N
Sbjct: 907  TGKCLKCIGHTTGDSCESCKEHHWGNAQLHTCKPCGCHTQGAVN 950


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
 Frame = +1

Query: 82   TGXCIKCX------QCNSXQXKHCGXPFKRAKPPVXCNTQDSIN 195
            TG C+KC        C S +  H G        P  C+TQ ++N
Sbjct: 907  TGKCLKCIGHTTGDSCESCKEHHWGNAQLHTCKPCGCHTQGAVN 950


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
 Frame = +1

Query: 82   TGXCIKCX------QCNSXQXKHCGXPFKRAKPPVXCNTQDSIN 195
            TG C+KC        C S +  H G        P  C+TQ ++N
Sbjct: 907  TGKCLKCIGHTTGDSCESCKEHHWGNAQLHTCKPCGCHTQGAVN 950


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,722,235
Number of Sequences: 27780
Number of extensions: 321384
Number of successful extensions: 856
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)