Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D05
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    29   0.82 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.8  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   5.8  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    26   5.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.8  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   7.7  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.7  

>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 28/118 (23%), Positives = 51/118 (43%)
 Frame = +1

Query: 268 LNNLLSSSCVKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDV 447
           L  L +SS  K LAS+   F+      QK+ + LS+  A   L  +   H L      D 
Sbjct: 421 LEYLANSS--KGLASKSIEFSKNRGHSQKKRKTLSESQAGDTLMSSEESHQLYDSDVMDC 478

Query: 448 IKKLTATGLMGACVDEEYGGKGLDYLTLAVAVEELSRGCASTGMIVSIHNFLYANLVN 621
                A+ L  +          +D  TL +++        ++ +++S+HN L A++++
Sbjct: 479 CFSFLASILTHSIALPRLLRTKIDLCTLQISLSN-----PTSTVLISMHNLLLASILS 531


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 589  WIRSCQYWRSPGTAPPRRRPVSSSLDP 509
            W  +  YW S  T  P R  VS  L+P
Sbjct: 2109 WSAALWYWGSYSTDKPNRMGVSGKLNP 2135


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 21/90 (23%), Positives = 37/90 (41%)
 Frame = +1

Query: 322 SFTSQLTEQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDVIKKLTATGLMGACVDEEY 501
           S     T+ +    +LS    D YL+PN ++    G  P   ++  +++           
Sbjct: 159 SIALNTTKSEATRSSLSSSSFDSYLRPNVSRSRSSGNAP-PFLRSRSSSSYSINKKKGTS 217

Query: 502 GGKGLDYLTLAVAVEELSRGCASTGMIVSI 591
           GG+   +LT A     LSR C+ +    S+
Sbjct: 218 GGQATRHLTYA-----LSRTCSQSSNTTSL 242


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 291 LREGVSVPMQKLHESADGTTKRISSIVQGIRRQ 389
           ++EG S+ MQ++    D   KR+ S +Q ++ +
Sbjct: 336 VQEGASLAMQRVQNKHDLEKKRLQSAIQPLQEE 368


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/51 (19%), Positives = 24/51 (47%)
 Frame = +1

Query: 262  IRLNNLLSSSCVKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAK 414
            ++L    +  C++   + C+    +L + Q+EY ++  E     L+ +  K
Sbjct: 3334 LKLEQKNAEECIQETIAACKDLDEKLLQLQEEYASMISEIHSMELQMDEVK 3384


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +1

Query: 250 ALKSIRLNNLLSSSC-----VKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAK 414
           AL++ + N +L S C     +  L  +  +    +   Q E+QA+S  ++D  L  +AA 
Sbjct: 89  ALQASKQNGILPSVCRLLIRLYLLWQKNPAIIEPMEGHQNEFQAVSSSWSDAELIASAAS 148

Query: 415 H 417
           H
Sbjct: 149 H 149


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 27  CHVLHAAKINFRVPSSFFSSLXNKAQ 104
           CHVLH  K+N + P     S   + Q
Sbjct: 161 CHVLHIDKVNIKYPMESSDSSSTEQQ 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,522
Number of Sequences: 5004
Number of extensions: 49598
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)