Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_D05
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 66 3e-11
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 54 8e-08
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 46 3e-05
10_06_0050 - 10072226-10072606 30 1.5
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050 30 1.5
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475... 30 2.0
07_03_1569 - 27792739-27794175 30 2.0
04_01_0180 + 2034021-2034023,2034741-2035088 28 6.0
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 65.7 bits (153), Expect = 3e-11
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Frame = +1
Query: 304 LASQCRSFTSQLT--EQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDV-IKKLTAT-G 471
LA + S S L + Q++++ +FA + + P+AA D FP DV + KL
Sbjct: 18 LARRLYSSASSLLFDDTQEQFKESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFN 77
Query: 472 LMGACVDEEYGGKGLDYLTLAVAVEELSRGCASTGMIVSIHNFLYANLVNEKGTPEQK 645
L G EEYGG GL Y+ +A+EE+SR S G+ H+ L N + G+P QK
Sbjct: 78 LHGLTAPEEYGGMGLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK 135
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 54.4 bits (125), Expect = 8e-08
Identities = 36/130 (27%), Positives = 62/130 (47%)
Frame = +1
Query: 283 SSSCVKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDVIKKLT 462
++S A AS LTE++K+ Q ++F + + P +K + FPF +I K++
Sbjct: 43 AASTFPAAASNYCQLDELLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMS 102
Query: 463 ATGLMGACVDEEYGGKGLDYLTLAVAVEELSRGCASTGMIVSIHNFLYANLVNEKGTPEQ 642
G+ G + + YG GL A+ E++R AS + + L + + G+ Q
Sbjct: 103 TLGIAGGTI-KGYGCPGLSGPACAMCFLEIARVDASIASFCLVQSCLAMVSIAQLGSEAQ 161
Query: 643 KELXLRDYTK 672
KE LR +K
Sbjct: 162 KEKYLRPLSK 171
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/117 (25%), Positives = 54/117 (46%)
Frame = +1
Query: 307 ASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDVIKKLTATGLMGAC 486
AS LT +++ + + +K + P A + + FPF I KL++ G+ G
Sbjct: 40 ASDYYQIDDLLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAGGT 99
Query: 487 VDEEYGGKGLDYLTLAVAVEELSRGCASTGMIVSIHNFLYANLVNEKGTPEQKELXL 657
+ + YG GL A+ + E++R AS + +H+ L + G+ QK+ L
Sbjct: 100 I-KGYGCPGLSITASAITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYL 155
>10_06_0050 - 10072226-10072606
Length = 126
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = +1
Query: 388 KYLKPNAAKHDLEGRFPFDVIKKLTATGLMGACVDEEYGGKGLDYLTLAVAVEELSRG-C 564
K + P HD GR P D +K L+ + + G D L + +L C
Sbjct: 29 KPVAPTPPSHDDHGRCPIDALKLRVCANLLNGLIGVKIGRGPDDCCPLLAGIADLDAAVC 88
Query: 565 ASTGMIVSIHNFLYANL 615
T + ++ + NL
Sbjct: 89 LCTALKANVLGLINLNL 105
>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
Length = 709
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -3
Query: 433 TVLPSHASLRSASSICRRIPWTMLDILFVVPSADS*SF 320
T+LPSHA L S++S+ R P T F P++D SF
Sbjct: 548 TLLPSHADLASSTSVLYRAPETRTAHAF-TPASDVYSF 584
>11_01_0596 +
4755453-4755490,4755675-4756047,4757739-4758940,
4759026-4759392
Length = 659
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Frame = -1
Query: 546 LHGDGQCQVV*TLATVFFVDAG----AHQACGCQLFYHIKREPSFQVMLRCVR--LQVFV 385
L GD ++ L DAG A QA Q F + R P FQV+L +R VF
Sbjct: 92 LRGDAAGRLFAPLVAAEPEDAGGEPVAVQALALQGFLRLCRSPEFQVLLNQIRGKAVVFT 151
Query: 384 GEFLGQCLIFFLLFRQLTREAS 319
G LG + + L +S
Sbjct: 152 GHSLGGAIAALVALHYLCTSSS 173
>07_03_1569 - 27792739-27794175
Length = 478
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 388 CRRIPWTMLDILFVVPSADS*S-FCIGTLTPSRKTTRA 278
CR + LD+L +PS+D F +G L+P TRA
Sbjct: 212 CRALEGEFLDVLAQIPSSDGDKLFAVGPLSPVLPDTRA 249
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 265 RLNNLLS--SSCVKALASQCRSFTSQLTEQQKEYQALSKEFAD 387
+LN+ + + ++AL Q ++ T E+QK++ L KEFA+
Sbjct: 39 KLNDTIKELNDTIEALERQVQNLTRYKEEKQKQHANLQKEFAE 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,086,286
Number of Sequences: 37544
Number of extensions: 343192
Number of successful extensions: 1034
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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