Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_D03
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              162   2e-40
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                30   1.7  
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   29   3.0  
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)         27   9.1  
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   9.1  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   9.1  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  162 bits (393), Expect = 2e-40
 Identities = 87/177 (49%), Positives = 109/177 (61%), Gaps = 5/177 (2%)
 Frame = +2

Query: 47  INHQHXRXVRRTEVKSQAXXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 226
           I  +H +   R E  SQ                 TNAKFNQIV++RL MSR  RPP+S++
Sbjct: 112 IEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSLA 171

Query: 227 RLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFD 406
           RL R MK    +  I VVVG++T+D R++++P + + AL  +E ARARIL AGGEILTFD
Sbjct: 172 RLVRKMKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFD 231

Query: 407 QLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTK-----PYVRTKGHEKAR 562
           QLALRAP G+ TVL+QG R AREA RH G APG P S T       Y+ T G  + R
Sbjct: 232 QLALRAPLGQNTVLLQGPRKAREAERHMGLAPGVPHSDTNWCGDLDYIGTDGDAQCR 288


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 427 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 317
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 109 QVKSLRFNFGAPNXPGVLMIDXKTQXDNQKKN 14
           Q  ++   F APN PGVLM D K +   ++++
Sbjct: 685 QTNNVNEGFDAPNGPGVLMTDEKNRGKEKERS 716


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 351 VT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 256
           +T R  T++FGIL  L +     TT  IKP R
Sbjct: 616 ITLRPITILFGILALLLNLFVFVTTVGIKPLR 647


>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +2

Query: 224 SRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTF 403
           SRL   MK PT++G+   V   V+      +   +T A     E+ RAR+L   G +   
Sbjct: 92  SRLYEEMKHPTQDGMFVAVNSEVSVTFVGKEKEDVTFAKCAWFER-RARMLKGFGFVTFR 150

Query: 404 DQLALRAPTGKKTVLVQGQ 460
           D   + +   KK  ++ G+
Sbjct: 151 DPATIESVLAKKPHILDGK 169


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 386 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 517
           GE+++ D++  +A   +       Q N  EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 330 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 449
           RWL ++  + L H  WL   ++L  +SWL+ +R      W
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56


>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 420 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 545
           V+R   R+ W K  +++V  CV LA++     L +  +F  R
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75


>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
          Length = 878

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 586 LDISTTTGPCFFMSLGANIGFSVRARCSWSRAKVTHCLTSI 464
           L IS +TG  + MSL   + FSV+   +W R  + H    +
Sbjct: 547 LYISDSTGLSYSMSLERVLYFSVKTGSTWLRHYIDHSFVDL 587


>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 420 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPR 545
           V+R   R+ W K  +++V  CV LA++     L +  +F  R
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRR 75


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 374 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 493
           LA  G   T        PT  +T+ + GQ   R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 283 HYHGNQTLTSWLLHVARQTRHRDWW 209
           HYH N+ L  +L  ++R      WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 505  SWSRAKVTHCLTSISLTLYQY 443
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,722,875
Number of Sequences: 59808
Number of extensions: 427837
Number of successful extensions: 1148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)