Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C23
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 149 5e-37
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 56 4e-09
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 33 0.030
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar... 33 0.052
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 29 0.85
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 2.0
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 2.6
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 27 2.6
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 3.4
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 27 3.4
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 6.0
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 25 7.9
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 149 bits (360), Expect = 5e-37
Identities = 66/151 (43%), Positives = 104/151 (68%)
Frame = +2
Query: 128 MNRLFGRAKPKEPGPSITDCIKNVDGRADXIEQKVQKLDTELRKYKDQMSKMREGPAKNS 307
M+RLFGR P +P S+TD I ++D R+D +E K+ KLD +L ++ +++ R GP + +
Sbjct: 1 MHRLFGRKPPTQPTASLTDAIDSLDKRSDSVEVKIAKLDAQLSVFQQKIANTRPGPGQTA 60
Query: 308 VKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEF 487
+KQ+AM VL+QKK+YE QL L+ QSFNMEQA T++LK+T T+ M++ Q+K +
Sbjct: 61 LKQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQETARQLKSQS 120
Query: 488 KKINIDSIDDVNDELADMMEQADEVQEALGR 580
K ++I+ I+ + DE+ D M+ A E+ E LG+
Sbjct: 121 KNVSIEKIEKLQDEIQDYMDAAGELNEVLGQ 151
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 56.4 bits (130), Expect = 4e-09
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +2
Query: 269 QMSKMREGPAKNSVKQK--AMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTT 442
Q+++ E KN+ K A+ LK+KKM+E +L + N+EQ ++ Q T
Sbjct: 41 QIAEQTEIARKNATTNKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFET 100
Query: 443 ISAMKDGVTQMKKEFKKINIDSIDDVNDELADMMEQADEVQEALGRQYGM 592
+ AM+ G MK + ++ D +D + D++ D ++E+ + G+
Sbjct: 101 LQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVGL 150
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 33.5 bits (73), Expect = 0.030
Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Frame = +2
Query: 149 AKPKEPGPSITDCIKNVDGRADXIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMR 328
AK + +TD I +A +EQK + + +RK + ++ + + SV +
Sbjct: 386 AKLRSTNAQLTDRITQESKKASFLEQKASEQEEVIRKLEKDLADV---DVEGSV-YLSNT 441
Query: 329 VLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDS 508
+++ Q N N + + + T SA+ D + Q + F++ N+
Sbjct: 442 TYRREGTSGQLSPTSSIMGGNPSLFNGSVLSRNSVNETGSAIVDVIKQQRDRFRRANVTL 501
Query: 509 IDDV---NDELADMMEQADEVQEA 571
++ V ND++A + + +EV+++
Sbjct: 502 VNQVSAANDKIALLESKLEEVEKS 525
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 212 DXIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYE 355
+ +E++V+ L EL KYKD + E A + ++ L+Q+K+Y+
Sbjct: 141 EKLEREVENLRKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLYK 188
>SPBC215.14c |vps20||vacuolar sorting protein
Vps20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 32.7 bits (71), Expect = 0.052
Identities = 19/92 (20%), Positives = 43/92 (46%)
Frame = +2
Query: 299 KNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMK 478
++S K+ A+R LK KK+Y + Q N+EQ + + +++G ++
Sbjct: 48 RDSDKRGALRALKAKKLYSGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIR 107
Query: 479 KEFKKINIDSIDDVNDELADMMEQADEVQEAL 574
+ + ++ + + ++ + M DEV + L
Sbjct: 108 QLQADMPLERVGRICNDRDEAMSYVDEVNDML 139
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 28.7 bits (61), Expect = 0.85
Identities = 18/95 (18%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = +2
Query: 209 ADXIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSF 388
++ +++ V+KLD + Y+D +K+ G + + + +L++ + +N ++
Sbjct: 46 SERLQESVKKLDANKKTYED--AKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIV 103
Query: 389 NM----EQANYATQTLKDTHTTISAMKDGVTQMKK 481
M + ++A Q L + T + ++ VT +K
Sbjct: 104 QMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEK 138
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Frame = +2
Query: 218 IEQKVQKLDTELRKYKDQMSKM--REGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFN 391
IE + + E+++ ++S++ PA VK + + ++ Q L +
Sbjct: 441 IEARQSEKLNEVQEETQRLSQLLISSQPALTEVKHLKLCLSDSQEELLQLNAKLEKANIV 500
Query: 392 MEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSID-DVNDEL 532
+++ N A L S+MKD +T+M + K+ I+S + +VN E+
Sbjct: 501 IDELNSAKLKLSKQVEEESSMKDDLTEMNQRLKE-QIESYENEVNSEI 547
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 427 GHSYHNICNEGWC 465
GH +HN C E WC
Sbjct: 57 GHYFHNHCLESWC 69
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 212 DXIEQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKK 346
D IEQ + ++K KD + + + PA+ ++ A +V+ +KK
Sbjct: 334 DAIEQTITWAKEYIKKAKDSLLCLPDSPARKALFALADKVITRKK 378
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 3.4
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 2/147 (1%)
Frame = +2
Query: 113 RFKPNM-NRLFGRAKPKEPGPSITDCIKNVDGRADXIEQKVQKLDTELRKYKDQMSKMRE 289
+ K NM N R + +E G D IKN E+ QKL ++K ++
Sbjct: 183 KVKQNMRNGASARDQAREQGSKAKDKIKNDPDAQKAKEETKQKLQDLYEEFKSVAVDLQG 242
Query: 290 GPA-KNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQANYATQTLKDTHTTISAMKDGV 466
P ++ V+ + K +Q N+ A + E + A Q LK I + +
Sbjct: 243 DPKYQHPVRSLLNLIDKFIDKLSEQSGNVTADT--NEHYDRAMQYLKQLVENI--LNRSL 298
Query: 467 TQMKKEFKKINIDSIDDVNDELADMME 547
+ K++ D+ +D +EL D +E
Sbjct: 299 DNLIDTLKQVQHDAEND--EELKDWLE 323
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +2
Query: 182 DCIKNVDGRADXIEQKVQKLDTELRKYKDQMSKM 283
+C K VDG + IE++++ D ++ ++Q ++
Sbjct: 34 ECYKTVDGDDNPIEERIKACDAGIQTSEEQKKEL 67
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 371 LRAQSFNMEQANYATQTLKDTHTTISAMKDGVTQMKKEFKKINIDSIDDVNDE-LADMME 547
L + +E+AN + + + +++ + KK+ KK+N DS DD+ + +++
Sbjct: 50 LTKKDVEVEEANGVEEAAETIESDTKEVQNIKPKSKKKKKKLN-DSSDDIEGKYFEELLA 108
Query: 548 QADEVQE 568
+ DE ++
Sbjct: 109 EEDEEKD 115
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +2
Query: 95 FTEFYKRFKPNMNRLFGRAKPKEPGPSITDCIKNVDGRADXIEQKVQKLDTELRKYKD 268
+T F F+PN+N+L K G + N D + Q V +LD E KYKD
Sbjct: 64 YTNFVNSFRPNINQL----KAVYMGLKAFESCSN-DEALRNLNQIVNELDEE--KYKD 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,980
Number of Sequences: 5004
Number of extensions: 42879
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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