Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C23
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      26   0.30 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 557 HQLVPSYQLTHHLHH 513
           H+ +P YQ  HHLHH
Sbjct: 64  HRDLPIYQSHHHLHH 78


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 221 EQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQ 400
           EQK  K + E RKY       RE   + S  +      K+ K+     +N +  ++N   
Sbjct: 46  EQKSYKNEREYRKY-------RETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYN 98

Query: 401 ANY 409
            NY
Sbjct: 99  NNY 101


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 221 EQKVQKLDTELRKYKDQMSKMREGPAKNSVKQKAMRVLKQKKMYEQQLDNLRAQSFNMEQ 400
           EQK  K + E RKY       RE   + S  +      K+ K+     +N +  ++N   
Sbjct: 46  EQKSYKNEREYRKY-------RETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYN 98

Query: 401 ANY 409
            NY
Sbjct: 99  NNY 101


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 357 CSYIFFCFNTLIAFCLT 307
           C   FFC N + ++C T
Sbjct: 284 CWVPFFCVNIVTSYCKT 300


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 159 KNLAPALRIALKT*MAEPXILNRKSRNW 242
           KN+ P L+IAL   +  P   +    NW
Sbjct: 602 KNIIPKLQIALSEFVINPHQQHLDQWNW 629


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 95   RNFSEPILINLQILLAFLN 39
            +NF++P+L+N Q+   +L+
Sbjct: 1032 KNFNQPLLVNDQLGQLYLD 1050


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,734
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)