Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C21
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450...   136   2e-32
02_05_1258 + 35290183-35290198,35290292-35290599,35290844-352909...   135   2e-32
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    27   9.7  

>05_01_0521 +
           4500268-4500283,4500364-4500680,4500999-4501094,
           4501219-4501296,4501333-4501557,4502842-4502910,
           4502946-4503200
          Length = 351

 Score =  136 bits (328), Expect = 2e-32
 Identities = 62/84 (73%), Positives = 73/84 (86%), Gaps = 1/84 (1%)
 Frame = +2

Query: 398 QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENE-GDKVEYRVWNPFRSK 574
           +V++ PH+H GVFIA+ KEDAL TKN+VPG  VYGEKRISV+NE G KVEYRVWNPFRSK
Sbjct: 70  KVVVVPHKHDGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNEDGTKVEYRVWNPFRSK 129

Query: 575 LAAAIMGGVDAIHMAPGSXVLYLG 646
           LAAA++GGVD I +APG+ VLYLG
Sbjct: 130 LAAAVLGGVDNIWIAPGTRVLYLG 153


>02_05_1258 +
           35290183-35290198,35290292-35290599,35290844-35290939,
           35291067-35291144,35291224-35291400,35292738-35292806,
           35292917-35293093
          Length = 306

 Score =  135 bits (327), Expect = 2e-32
 Identities = 62/84 (73%), Positives = 73/84 (86%), Gaps = 1/84 (1%)
 Frame = +2

Query: 398 QVIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENE-GDKVEYRVWNPFRSK 574
           +V++ PH+H GVFIA+ KEDAL TKN+VPG  VYGEKRISV+NE G KVEYRVWNPFRSK
Sbjct: 67  KVVVVPHKHNGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNEDGTKVEYRVWNPFRSK 126

Query: 575 LAAAIMGGVDAIHMAPGSXVLYLG 646
           LAAA++GGVD I +APG+ VLYLG
Sbjct: 127 LAAAVLGGVDNIWIAPGTRVLYLG 150


>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
            14291855-14292025,14292560-14292647,14292711-14292802,
            14292920-14293384,14293860-14294633,14294890-14295087,
            14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 538  GGVQSLESVQIEIGSCNYGWSGCYTHGPWVXSFVSR 645
            GG+  +    I +GSC Y  S C     W  + ++R
Sbjct: 1256 GGLSDVSGAAIIVGSCGYSTSDCPIVEIWAGNKINR 1291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,263,186
Number of Sequences: 37544
Number of extensions: 191735
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)