Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C21
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...   123   1e-28
AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical...    28   6.5  

>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score =  123 bits (296), Expect = 1e-28
 Identities = 53/82 (64%), Positives = 67/82 (81%)
 Frame = +2

Query: 401 VIIEPHRHPGVFIARGKEDALVTKNLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLA 580
           V++EPHR  GVFI +GKEDAL TKN+V G  VYGEKR+SV++    +EYRVWNPFRSKLA
Sbjct: 117 VVVEPHRLGGVFIVKGKEDALATKNMVVGESVYGEKRVSVDDGAGSIEYRVWNPFRSKLA 176

Query: 581 AAIMGGVDAIHMAPGSXVLYLG 646
           A+IMGG++  H+ PG+ +LYLG
Sbjct: 177 ASIMGGLENTHIKPGTKLLYLG 198


>AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical
           protein Y87G2A.11 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 473 NLVPGSEVYGEKRISVENEGDKVEYRVWNPFRSKLAAAIMGG 598
           N+  G E+    +I +ENE D++    W+P        + GG
Sbjct: 145 NMENGPEIVQNLKIPLENEEDEMFSATWSPHHDGNMLGVTGG 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,177,939
Number of Sequences: 27780
Number of extensions: 160016
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)