Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C20
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     124   7e-31
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         110   1e-26
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      31   0.009
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.57 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  124 bits (300), Expect = 7e-31
 Identities = 56/116 (48%), Positives = 79/116 (68%)
 Frame = +3

Query: 114 MASXAQFSLCWNNFHANMSAGFHGLLSRGXLVXVTLAAEGRLLQAHKLVLSVCSPYFQEM 293
           M     F L WNN+ +++++ F  L      V VTLA +GR L+AH++VLS CSPYF+E+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 294 FKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLT 461
            K  P +HP++ L+DV+ S L  L++F+Y GEVNV Q  L+SF+ TAE L+V GLT
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  110 bits (265), Expect = 1e-26
 Identities = 51/110 (46%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
 Frame = +3

Query: 132 FSLCWNNFHANMSAGFHGLLSRGXLVXVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMNPT 311
           + L WNN+ +NM++ FH LL     V VTLA     L+AHK+VLS CS YFQ++   NP 
Sbjct: 11  YCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPC 70

Query: 312 QHP-IVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 458
           +HP I+  +DV  + L+ +++F+Y+GE++V Q EL S + TA+QL++KGL
Sbjct: 71  KHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGL 120



 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 67  SQSKASARFHVXSSLSWRRXH 129
           S +KASA F + S+  W+R H
Sbjct: 429 SLTKASATFGIPSTTLWQRAH 449


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 114 MASXAQFSLCWNNFHANMSAGFHGLLSRGXLVXVTLAAE 230
           M     F L WNN+ +++++ F  L      V VTLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 363 LLQFMYQGEVNVKQEELASFIS-TAEQLQVKGLTGNQNEE 479
           ++  +Y G VNV+ E + S++    ++  V    GN NE+
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEK 82


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 481 LSSF*LPVKPLT*SCSAVLINDANSSCLTLTSP 383
           LSS      P+T + S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 90  VPRRVVAIMASXAQFSLCWNNFHA 161
           V R +VA++ +   F +CW  FHA
Sbjct: 283 VIRMLVAVVVA---FFICWAPFHA 303


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = -2

Query: 544 CLCCDDL-GPG 515
           C CCD+L GPG
Sbjct: 13  CWCCDNLGGPG 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,740
Number of Sequences: 438
Number of extensions: 3130
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)