Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C18
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 74 2e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 2e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 65 8e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 55 9e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 54 2e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 48 1e-06
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 47 2e-06
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 31 0.12
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 0.50
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 1.5
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 27 2.0
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 27 2.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 6.1
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 25 6.1
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 25 6.1
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 25 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 73.7 bits (173), Expect = 2e-14
Identities = 51/155 (32%), Positives = 76/155 (49%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
+EI ALV D G + G+A +D P+A P++VG P H + G + Q S
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVG-RPRHH------GIMVG-MGQKDSYV 54
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V+NWD EK+ + + +R E HP L
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLL 105
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ ++IFE + APAF++ A L
Sbjct: 106 TEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVL 140
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.1 bits (164), Expect = 2e-13
Identities = 45/154 (29%), Positives = 71/154 (46%)
Frame = +1
Query: 109 YGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTG 288
YGGDE+ A+V DPG R+G++ ED PK +P+ G + DG
Sbjct: 6 YGGDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG------------EFSDG------ 47
Query: 289 SKAGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHP 468
R ++ PGME++ +++G V+NWD+ + Y + +++ HP
Sbjct: 48 -------RRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100
Query: 469 VLFTEAVWATRPVREKLXELIFEKYQAPAFFLVK 570
+L TE R K E +FE + PA +L K
Sbjct: 101 ILITEPFDNPPENRVKTLETMFESLRCPATYLAK 134
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 64.9 bits (151), Expect = 8e-12
Identities = 42/153 (27%), Positives = 71/153 (46%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
+EI +LV DPG R GYA E++P +P+ GV TG
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDV----------------TGRN- 50
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
++ +D ++H P PGMEV+ +G + +W+ + + ++ + ++
Sbjct: 51 ----KYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMI 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNA 576
TE W + VR+++ E FE+ PAF+L K A
Sbjct: 107 TEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQA 139
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.8 bits (126), Expect = 9e-09
Identities = 45/162 (27%), Positives = 69/162 (42%)
Frame = +1
Query: 70 IKEYIMSGPNGMLYGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNS 249
++E + SGP LV D G LR G+ E PK +V
Sbjct: 6 VREPVFSGPTPSFQNVSNDIPLVIDNGSWQLRAGWGGEKDPKLVFDNLVS---------- 55
Query: 250 EEKVPDGNITQTGSKAGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYC 429
+ D +++T + G++ I+V + R E + NWDL E++LDY
Sbjct: 56 --RYRDRKLSRTSTLVGNDT--LIEVGSRSIARSPFERNV------ISNWDLMEQVLDYT 105
Query: 430 YSKVIRSPSEHHPVLFTEAVWATRPVREKLXELIFEKYQAPA 555
+ K+ EH P+ TE + VR + EL+FE Y AP+
Sbjct: 106 FLKLGIDRMEH-PICMTEPLANPTYVRSTMTELLFELYNAPS 146
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 53.6 bits (123), Expect = 2e-08
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 7/157 (4%)
Frame = +1
Query: 133 LVFDPGHHSLRVGYAQEDTPKADIPAVVGV-------GPATHIPNSEEKVPDGNITQTGS 291
++ D G ++GYA D P P V+ GPA S G+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSY-MASKGSGHLSSK 66
Query: 292 KAGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPV 471
+A +L +I L G + ++ GQ++NWD E+ K +R E H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 472 LFTEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
L TE RE E++FE + ++ A L
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVL 163
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 48.0 bits (109), Expect = 1e-06
Identities = 37/154 (24%), Positives = 73/154 (47%)
Frame = +1
Query: 121 EIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKAG 300
E +V D G ++VGYA+++ P+ P++VG I +EEK GN+
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVG----RPILRAEEKT--GNV-------- 47
Query: 301 SELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLFT 480
+++ + E R ++V+ M++G + +++ ++ DY + + ++ +L T
Sbjct: 48 -QIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLT 106
Query: 481 EAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
E REK+ E +FE+Y ++ A L
Sbjct: 107 EPPMNPVANREKMCETMFERYGFGGVYVAIQAVL 140
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 47.2 bits (107), Expect = 2e-06
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 1/142 (0%)
Frame = +1
Query: 133 LVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKAGSELR 312
+ D G ++ G+A +D PK P VG E+V +I Q GSE +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVG-------RIKHERVMPSSI-QKDMFVGSEAQ 63
Query: 313 HYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYS-KVIRSPSEHHPVLFTEAV 489
+ R +++Q ++ G + NW E++ Y YS + + + E HP+L TE
Sbjct: 64 NL---------RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPP 114
Query: 490 WATRPVREKLXELIFEKYQAPA 555
A +EK+ E +E PA
Sbjct: 115 LANIRNKEKIAEYFYETLNVPA 136
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 31.1 bits (67), Expect = 0.12
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +1
Query: 202 IPAVVGVGPATHIPNSEEKVPDGNITQTGSKAGSELRHYIDVTELHVPRPGMEVQTYMKD 381
+P+ +G A + V DG+ TG + +RH + V + G ++ + D
Sbjct: 425 VPSAMGYAVAAPERRTIVMVGDGSFQLTGQEISQMIRHKLPVLIFLLNNRGYTIEIQIHD 484
Query: 382 G---QVDNWD 402
G ++ NWD
Sbjct: 485 GPYNRIQNWD 494
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.1 bits (62), Expect = 0.50
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 76 EYIMSGPN-GMLYGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSE 252
EY+MSG + G + D++ A + H E P+ AV G+ I N+E
Sbjct: 684 EYVMSGSDDGRFFIWDKLNASILAIIHGDSEAVNVIEGHPRCPTLAVSGIDSTVKIFNTE 743
Query: 253 EKVPDG 270
P G
Sbjct: 744 NTPPSG 749
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 457 EHHPVLFTEAVWATRPVREKLXELIFEKYQAPA 555
EHHPVL T ++++ P+ E L L Y PA
Sbjct: 705 EHHPVLSTVSLFSDNPMYEDL--LALTTYLGPA 735
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 429 TIIEHLLEQIPVVDLSVFHVRLHFHTRTRNVELCDVYVVSQLAARFTAGLSDIAI 265
+I EHL I V+LS F ++V CDVY+VS + + L ++ I
Sbjct: 18 SICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPASGQVNDHLMELLI 72
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 190 PKADIPAVVGVGPATHIPNSEEKVPD 267
PKAD+ +V VG +T IP + V D
Sbjct: 329 PKADVHDIVLVGGSTRIPKVQRLVSD 354
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/82 (19%), Positives = 40/82 (48%)
Frame = +1
Query: 304 ELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLFTE 483
+ +H++ + R +E+ T +K + +WD F+ + K +R+ E +
Sbjct: 604 DFQHFLQRPTQRLQRYTLELDTILKHTEQSSWD-FQLITQAV--KELRATCEECDAVIAT 660
Query: 484 AVWATRPVREKLXELIFEKYQA 549
+ A R +R+ +L+F+ +++
Sbjct: 661 VLEANR-IRDLSYQLLFKNHES 681
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 6.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 292 KAGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDY-CYSK-VIRSPSEHH 465
K+ +L +Y+++ + P GME + G + DL + MLDY Y + + EHH
Sbjct: 233 KSMQQLPNYVEMKHIPPPNGGMEA-LFSAAGH-EEIDLLKMMLDYNPYRRPTAQQALEHH 290
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -1
Query: 216 HNRWYISFWGILLRITNSQRMMTRIKD*CTYLVSPV 109
+N + + W ++ +I + Q + ++ D C L+SPV
Sbjct: 202 NNNFLGNLWSLMPKILDYQHLYSKPCDFCKSLISPV 237
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 238 IPNSE---EKVPDGNITQTGSKAGSELRHYIDVTELHVPR 348
IPN + K + NI Q + AG+ +RH+ + ++VPR
Sbjct: 348 IPNKKTIKHKGENINIIQLETAAGAAIRHFKNAHGVNVPR 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,849
Number of Sequences: 5004
Number of extensions: 53029
Number of successful extensions: 180
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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