Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C18
(582 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 100 1e-21
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 9e-13
SB_56| Best HMM Match : Actin (HMM E-Value=0) 70 1e-12
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 69 3e-12
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 39 0.003
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 36 0.024
SB_54| Best HMM Match : Actin (HMM E-Value=0) 36 0.032
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 34 0.074
SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 29 2.1
SB_53822| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_48315| Best HMM Match : GASA (HMM E-Value=1.8) 29 2.1
SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6) 28 6.4
SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082) 28 6.4
SB_52701| Best HMM Match : MAM (HMM E-Value=7.8e-11) 27 8.5
SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 100 bits (239), Expect = 1e-21
Identities = 45/72 (62%), Positives = 55/72 (76%)
Frame = +1
Query: 367 TYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLFTEAVWATRPVREKLXELIFEKYQ 546
T +KDG +++WDLFEK+LDY YSK I+S S HP+L +EA W TR REKL EL+FEKY
Sbjct: 2 TPIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYN 61
Query: 547 APAFFLVKNAXL 582
PAFFL KN+ L
Sbjct: 62 VPAFFLCKNSVL 73
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 70.5 bits (165), Expect = 9e-13
Identities = 48/155 (30%), Positives = 74/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
DEI ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + +PA ++ A L
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVL 141
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 70.1 bits (164), Expect = 1e-12
Identities = 47/155 (30%), Positives = 74/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 3 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 54
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + +PA ++ A L
Sbjct: 106 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVL 140
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 69.7 bits (163), Expect = 2e-12
Identities = 47/155 (30%), Positives = 74/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
D+I ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + +PA ++ A L
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVL 141
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 68.9 bits (161), Expect = 3e-12
Identities = 46/155 (29%), Positives = 74/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
D++ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 3 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 54
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + +PA ++ A L
Sbjct: 106 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVL 140
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 68.9 bits (161), Expect = 3e-12
Identities = 46/155 (29%), Positives = 74/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
D++ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + +PA ++ A L
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVL 141
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 45.2 bits (102), Expect = 4e-05
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 4/154 (2%)
Frame = +1
Query: 133 LVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQ--TGSKAGSE 306
+V D G ++ GYA + P P++VG I S +KV D + G +A S+
Sbjct: 9 IVCDNGTGFVKCGYAGSNFPAHIFPSMVG----RPIIRSSQKVGDIEVKDLMVGDEA-SQ 63
Query: 307 LRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCY--SKVIRSPSEHHPVLFT 480
LR+ ++V + P M +G V NWD + + DY + SK+ P + VL T
Sbjct: 64 LRYMLEV---NYP---------MDNGIVRNWDDMKHVWDYTFGESKMNIDP-RNTKVLLT 110
Query: 481 EAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
E REK+ E++FE YQ ++ A L
Sbjct: 111 EPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVL 144
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +1
Query: 463 HPVLFTEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
HPVL TEA R REK E+ FE + PA F+ A L
Sbjct: 127 HPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVL 166
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 219
D++ ALV D G + G+A +D P+A P++VG
Sbjct: 3 DDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVG 36
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +1
Query: 340 VPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHH----PVLFTEAVWATRPV 507
+ +P + ++ V++WDL E+ + C K +R+ E H VL A W +R V
Sbjct: 291 IDKPSYATKWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLLAVLALAASWTSRQV 350
Query: 508 REK 516
E+
Sbjct: 351 GER 353
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 35.5 bits (78), Expect = 0.032
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 412 KMLDYCYSKVIRSPSEHHPVLFTEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
KM ++ + + +R E PVL TEA + RE++ +L+FE + P ++ A +
Sbjct: 2130 KMWEHAFDQ-LRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVM 2185
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 34.3 bits (75), Expect = 0.074
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 133 LVFDPGHHSLRVGYAQEDTPKADIPAVVG 219
LV D G H +VG+A +D PK P +VG
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVG 1387
>SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Frame = +1
Query: 85 MSGPNGMLYGGDEIGALVFDPGHHSLRVGYAQEDT-PKADIPAVV---------GVGPAT 234
++GP G Y G+ +G P ++ VGYA E P A PA + G+GP
Sbjct: 220 ITGPVG--YAGERLGPTAHAPASNTGPVGYAGEGLGPTAHAPASITGPVGYAGEGLGPTA 277
Query: 235 HIPNS 249
H P S
Sbjct: 278 HAPAS 282
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Frame = +1
Query: 85 MSGPNGMLYGGDEIGALVFDPGHHSLRVGYAQEDT-PKADIPAVV---------GVGPAT 234
++GP G Y G+ +G P + VGYA E P A PA + G+GP
Sbjct: 157 ITGPVG--YAGERLGPTAHAPASITGPVGYADERLGPTAHAPASITGPVGYADEGLGPTA 214
Query: 235 HIPNS 249
H P S
Sbjct: 215 HAPAS 219
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 29.5 bits (63), Expect = 2.1
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Frame = +1
Query: 154 HSLRVGYAQEDTPKADIPAVVGVG---PATHIPNSEEKVPDGNITQTG--SKAGSELRHY 318
H L G A+ +P A+ G G P+T + +S+ +P+ +T S SE
Sbjct: 1169 HLLAAGDAEHTSPPTTATAMTGSGFVLPSTPVVSSKPILPEPEVTPLPEVSPKSSETVVP 1228
Query: 319 IDVTELHVPRPGMEVQTYM----KDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLFTEA 486
TE V+ Y K + NW ++EK + + S PS H TEA
Sbjct: 1229 TCTTESPPDVASTPVRRYPRRTPKPVRRVNWSIYEKRVIFTGSSTRSCPSVHMTQEKTEA 1288
>SB_53822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 258
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +1
Query: 292 KAGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPV 471
+ G +HY+++ L E T+++ +N L +LD+C + +EH +
Sbjct: 106 RVGENKQHYLELQALASKYNLSEKVTFIRSFS-ENQKL--ALLDFCCCLLYTPSNEHFGL 162
Query: 472 LFTEAVWATRPV 507
+ EA++A RPV
Sbjct: 163 VPIEAMYAERPV 174
>SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)
Length = 340
Score = 29.5 bits (63), Expect = 2.1
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Frame = +1
Query: 154 HSLRVGYAQEDTPKADIPAVVGVG---PATHIPNSEEKVPDGNITQTG--SKAGSELRHY 318
H L G A+ +P A+ G G P+T + +S+ +P+ +T S SE
Sbjct: 103 HLLAAGDAEHTSPPTTATAMTGSGFVLPSTPVVSSKPILPEPEVTPLPEVSPKSSETVVP 162
Query: 319 IDVTELHVPRPGMEVQTYM----KDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLFTEA 486
TE V+ Y K + NW ++EK + + S PS H TEA
Sbjct: 163 TCTTESPPDVASTPVRRYPRRTPKPVRRVNWSIYEKRVIFTGSSTRSCPSVHMTQEKTEA 222
>SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 220 VGPATHIPNSEEKVPDGNITQTGSKAGSELRHYIDVTEL 336
+GP S+ VP G S+LRH + VTE+
Sbjct: 76 IGPTLEYLASKTSVPPQTGAPVGQNKPSQLRHVVSVTEM 114
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 217 PQPLVYQLLGYPLAHNQLATNDDQDQRLVHLSRLPRTACR 98
P PL LGYP +QLA++ Q++ + T C+
Sbjct: 588 PSPLASDTLGYPQVPSQLASDTTAYQQVPYQPASDTTVCQ 627
>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
Length = 722
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 178 QEDTPKADIPAVVGVGPATHIPN--SEEKVPDGNITQTGSKAGSELRH-YIDV 327
QED P+ DIP +V ++++P+ + D N G K+ ++ + Y DV
Sbjct: 307 QEDQPEYDIPVIVEDTDSSYVPDFGDNAQYQDVNGANGGKKSSADEEYIYADV 359
>SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082)
Length = 546
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 175 AQEDTPKADIPAVVGVGPATH-IPNSEEKVPDGNITQTGSKAGSELRHYIDVTELHVPR 348
+QE T +A P V A H IP ++ +P+ N T S E+ ++D ++HV +
Sbjct: 411 SQETTKRA--PRV-SKHEANHAIPKPQKTLPNMNNNATESSTPMEVEEFVDTGDIHVTK 466
>SB_52701| Best HMM Match : MAM (HMM E-Value=7.8e-11)
Length = 421
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 143 SKTSAPISSPPYSMPFGPLIIYSFIMLL*KCYFHLIKNNK 24
S SAP++ PP S P P+ +S L C F +K +K
Sbjct: 104 SSISAPVTQPPPSTPAPPIEKFSCNFDLDTCGFINLKTDK 143
>SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1432
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 315 LHRRHRAPRSASGYGSADVHERRTSRQLGSVREDA 419
+++RH PR +GY V +R R+L +DA
Sbjct: 799 IYKRHGKPRKMAGYNEDPVKKRFRGRRLLQQMQDA 833
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,136,663
Number of Sequences: 59808
Number of extensions: 429008
Number of successful extensions: 1041
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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