Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C18
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 142 2e-34
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 69 2e-12
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 69 2e-12
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 69 2e-12
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 69 2e-12
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 69 2e-12
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 69 2e-12
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 68 4e-12
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 68 4e-12
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 67 1e-11
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 60 1e-09
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 58 3e-09
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 54 1e-07
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 48 6e-06
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 39 0.003
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 37 0.009
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 37 0.009
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 36 0.021
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 36 0.021
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 1.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 1.0
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 30 1.4
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 30 1.4
Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL132951-6|CAC44308.2| 692|Caenorhabditis elegans Hypothetical ... 27 7.4
AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical... 27 7.4
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 142 bits (344), Expect = 2e-34
Identities = 67/164 (40%), Positives = 105/164 (64%), Gaps = 2/164 (1%)
Frame = +1
Query: 97 NGMLYGGDEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSE--EKVPDG 270
+G +YGGDE+ LVFD G S RVG+A E+ PK DIP+ + V A E E + +G
Sbjct: 2 SGAVYGGDEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEG 61
Query: 271 NITQTGSKAGSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRS 450
+ ++ +K E +I T++ VPR ++++MK+G +++W+LFEK++++ Y ++ S
Sbjct: 62 DNSKVQTKR--EKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYS 119
Query: 451 PSEHHPVLFTEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
HPVLF+E+ W R REKL E++FEK+Q PA++L KN L
Sbjct: 120 NPSEHPVLFSESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVL 163
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 69.3 bits (162), Expect = 2e-12
Identities = 47/155 (30%), Positives = 73/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + PA ++ A L
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 141
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 69.3 bits (162), Expect = 2e-12
Identities = 47/155 (30%), Positives = 73/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + PA ++ A L
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 141
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 69.3 bits (162), Expect = 2e-12
Identities = 47/155 (30%), Positives = 73/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + PA ++ A L
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 141
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 69.3 bits (162), Expect = 2e-12
Identities = 47/155 (30%), Positives = 73/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + PA ++ A L
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 141
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 69.3 bits (162), Expect = 2e-12
Identities = 47/155 (30%), Positives = 73/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + PA ++ A L
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 141
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 69.3 bits (162), Expect = 2e-12
Identities = 47/155 (30%), Positives = 73/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
DE+ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + PA ++ A L
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 141
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 68.1 bits (159), Expect = 4e-12
Identities = 46/155 (29%), Positives = 73/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
D++ ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + PA ++ A L
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 141
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 68.1 bits (159), Expect = 4e-12
Identities = 45/155 (29%), Positives = 73/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
D++ AL+ D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 4 DDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 55
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 56 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + PA ++ A L
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 141
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 66.9 bits (156), Expect = 1e-11
Identities = 47/155 (30%), Positives = 73/155 (47%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKA 297
+EI ALV D G + G+A +D P+A P++VG P + + + Q S
Sbjct: 3 EEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYV 54
Query: 298 GSELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
G E + + L P ++ G V NWD EK+ + + +R E HPVL
Sbjct: 55 GDEAQSKRGILTLKYP---------IEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLL 105
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TEA + REK+ +++FE + PA ++ A L
Sbjct: 106 TEAPLNPKSNREKMTQIMFETFNTPAMYVNIQAVL 140
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 59.7 bits (138), Expect = 1e-09
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 1/155 (0%)
Frame = +1
Query: 121 EIGALVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKAG 300
++ A V D G ++GYA P+ IP+ + V NS+ + + AG
Sbjct: 5 QLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVG-----AG 59
Query: 301 -SELRHYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLF 477
+L +I L V+ ++ G V++WDL E+ + C K +R+ E H L
Sbjct: 60 IDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLL 119
Query: 478 TEAVWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
TE T RE E++FE + P ++ A L
Sbjct: 120 TEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVL 154
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 58.4 bits (135), Expect = 3e-09
Identities = 41/140 (29%), Positives = 65/140 (46%)
Frame = +1
Query: 163 RVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKAGSELRHYIDVTELHV 342
R G+A +D P+A P++VG P + + + Q S G E + + L
Sbjct: 5 RAGFAGDDAPRAVFPSIVGR------PRHQGVMV--GMGQKDSYVGDEAQSKRGILTLKY 56
Query: 343 PRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLFTEAVWATRPVREKLX 522
P ++ G V NWD EK+ + + +R E HPVL TEA + REK+
Sbjct: 57 P---------IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 107
Query: 523 ELIFEKYQAPAFFLVKNAXL 582
+++FE + PA ++ A L
Sbjct: 108 QIMFETFNTPAMYVAIQAVL 127
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/70 (35%), Positives = 39/70 (55%)
Frame = +1
Query: 373 MKDGQVDNWDLFEKMLDYCYSKVIRSPSEHHPVLFTEAVWATRPVREKLXELIFEKYQAP 552
++ G V NWD EK+ + + +R E HPVL TEA + REK+ +++FE + P
Sbjct: 28 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 87
Query: 553 AFFLVKNAXL 582
A ++ A L
Sbjct: 88 AMYVAIQAVL 97
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 47.6 bits (108), Expect = 6e-06
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 1/151 (0%)
Frame = +1
Query: 133 LVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKAGSELR 312
+V D G ++ G+A E PK VG P H + DG+I G KA S
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVG-RPKYHRVMAGGL--DGDIF-IGPKAESN-- 64
Query: 313 HYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYSK-VIRSPSEHHPVLFTEAV 489
R ++ M+ G V+NW EK+ +Y + + ++ E HPVL T+A
Sbjct: 65 -----------RGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAP 113
Query: 490 WATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
RE+ E+ FE + PA ++ A L
Sbjct: 114 LNPLKNRERSAEIFFETFNVPALYIQMQAVL 144
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 38.7 bits (86), Expect = 0.003
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 2/152 (1%)
Frame = +1
Query: 133 LVFDPGHHSLRVGYAQEDTPKADIPAVVGVGPATHIPNSEEKVPDGNITQTGSKAGSELR 312
+V D G ++ GYA + P P++VG I S ++V GNI G E
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVG----RPIVRSTQRV--GNIEIKDLMVGEECS 62
Query: 313 HYIDVTELHVPRPGMEVQTYMKDGQVDNWDLFEKMLDYCYS--KVIRSPSEHHPVLFTEA 486
+ +++ P M +G V NWD + D+ + K+ P E +L TE
Sbjct: 63 QLRQMLDINYP---------MDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECK-LLLTEP 112
Query: 487 VWATRPVREKLXELIFEKYQAPAFFLVKNAXL 582
REK+ +++FE+Y + ++ A L
Sbjct: 113 PLNPNSNREKMFQVMFEQYGFNSIYVAVQAVL 144
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 219
DE+ ALV D G + G+A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 219
DE+ ALV D G + G+A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 35.9 bits (79), Expect = 0.021
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 219
D++ ALV D G + G+A +D P+A P++VG
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 35.9 bits (79), Expect = 0.021
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 118 DEIGALVFDPGHHSLRVGYAQEDTPKADIPAVVG 219
D++ ALV D G + G+A +D P+A P++VG
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1
Query: 235 HIPNSEEKVPDGNITQTGSK---AGSELRHYIDVTELHVPRPGMEVQTYMKDGQV 390
++ +E V G+ G+K A +LR++ +LH+ +PG V+ +MKDG +
Sbjct: 392 NVDKLQELVNRGDTQYPGAKENGARVDLRYHPRAADLHL-QPGYRVERHMKDGDI 445
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1
Query: 235 HIPNSEEKVPDGNITQTGSK---AGSELRHYIDVTELHVPRPGMEVQTYMKDGQV 390
++ +E V G+ G+K A +LR++ +LH+ +PG V+ +MKDG +
Sbjct: 392 NVDKLQELVNRGDTQYPGAKENGARVDLRYHPRAADLHL-QPGYRVERHMKDGDI 445
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 178 QEDTPKADIPAVVGVGPATHIP----NSEEKVPDGNITQTGSKAGSELRHYIDV 327
+E PKAD+ ++ V HIP EE++PD N + G + L +++
Sbjct: 494 EEKEPKADVRRLMIVCHELHIPLLHHTLEERIPDSNSAELGLPKAAVLEQLLEL 547
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 178 QEDTPKADIPAVVGVGPATHIP----NSEEKVPDGNITQTGSKAGSELRHYIDV 327
+E PKAD+ ++ V HIP EE++PD N + G + L +++
Sbjct: 494 EEKEPKADVRRLMIVCHELHIPLLHHTLEERIPDSNSAELGLPKAAVLEQLLEL 547
>Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical
protein F57A8.5 protein.
Length = 352
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 143 ILVIIRCELVMRKRIPQKLIYQRLWASGQLHTSQIPKK 256
+L C++ R+ QKL+Y W++ TS P K
Sbjct: 32 VLSCYACKMFFRRMSVQKLVYNCKWSNNCFETSPYPLK 69
>AL132951-6|CAC44308.2| 692|Caenorhabditis elegans Hypothetical
protein Y67H2A.7 protein.
Length = 692
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +1
Query: 400 DLFEKMLDYCYSKVIRSPSEHHPVLFTEAVWATRPVREKLXELIFEKYQ 546
D F + C+++V HHP + E + RP L + + ++ Q
Sbjct: 634 DPFSRKWGDCWAEVQSHGGGHHPAVLLEKILGFRPTENDLTQALSKESQ 682
>AC006769-14|AAF60579.1| 378|Caenorhabditis elegans Hypothetical
protein Y45G12C.1 protein.
Length = 378
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -1
Query: 414 LLEQIPVVDLSVFHVRLHFHTRTRNVELCDV--YVVSQLAARFTAGLSDIAIRNLFFGIW 241
+L + + D + + + + R + YV + + RF A + AIR+ F +W
Sbjct: 161 ILYSLDLTDKDILDIEKEPNVKVRKFDYSKYPKYVKNLMEYRFKALILAEAIRD-FQNVW 219
Query: 240 DVCSWPDAHNRWY 202
W DAH +W+
Sbjct: 220 ----WIDAHTKWF 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,953,947
Number of Sequences: 27780
Number of extensions: 313680
Number of successful extensions: 761
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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