Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C18
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 258 LFFGIWDVCSWPDAHNRWYISFWG 187
           L   +W    W D + RW +S +G
Sbjct: 70  LITNLWLKLEWNDVNMRWNVSDYG 93


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = -2

Query: 257 FSSEFGMCVAGPTPTTAG---ISAFG 189
           F+ EFG+C  GP     G   +SA+G
Sbjct: 380 FTVEFGLCKEGPDVKAYGAGLLSAYG 405


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 122 SSPPYSMPFGPLI 84
           SS P ++P+GP+I
Sbjct: 645 SSNPLNVPYGPVI 657


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 100 GMLYGGDEIG 129
           G++Y GDEIG
Sbjct: 381 GVVYNGDEIG 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,068
Number of Sequences: 438
Number of extensions: 4054
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)