Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C16
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...   184   1e-47
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    28   1.7  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    27   3.0  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    27   3.9  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    27   3.9  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   3.9  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    26   6.9  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   6.9  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     26   6.9  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    25   9.1  

>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score =  184 bits (448), Expect = 1e-47
 Identities = 84/190 (44%), Positives = 123/190 (64%), Gaps = 6/190 (3%)
 Frame = +2

Query: 209 YETLVEXANFLLSRISE---KPNIGIICGSGMGSLAESIADGV-RIPYEDIPNFPISTVE 376
           Y   +E   +++ ++ E   KP + IICGSG+G+LA  ++  V  +PYEDIP+F +S V 
Sbjct: 20  YIKALEAREYIIEQVPEELSKPKVAIICGSGLGTLASGLSAPVYEVPYEDIPHFHVSHVP 79

Query: 377 GHHGQLVFGHI--EGVSVVAMQGRFHYYEGYPLWKCCLPVRVMKLLGVKILIATNAAGGL 550
           GH  +L F  +  + V  + + GR+H YEGYP+     PVR+MK++GV++++ TNAAGGL
Sbjct: 80  GHASKLYFAFLGEKRVPTMILAGRYHSYEGYPIEATTFPVRLMKVMGVEVMVVTNAAGGL 139

Query: 551 NPNYKIGDLMIVRDHINMMGFAGNNPLHGPNDERFGPXFPPMNKAYNYEFXKIAKEVAKE 730
           N  +K+GDLMI++DHIN  G AG NPL GPN   FG  FPP++ AY+ E  K+  + AK 
Sbjct: 140 NQGFKVGDLMILKDHINFPGLAGMNPLRGPNAHEFGVRFPPLSDAYDLELRKLVYDAAKA 199

Query: 731 LNIDHIVREG 760
             +   + EG
Sbjct: 200 HKVSRTIHEG 209


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 247 ENIRETEHWHHLRLWDGFTSRKYSRRGKNTIRR 345
           +++RET+  H+  +W G  SRK      N +RR
Sbjct: 670 KSLRETDFCHNASIWIGTESRKVLNIPLNDLRR 702


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 251 ISEKPNIGIICGSGMGSLAESIADGVRI-PYEDIPNF 358
           +S  PN  ++CGS  G +     D VR+ P E + NF
Sbjct: 261 VSSLPNGDLVCGSSDGFVRIFTVDKVRVAPTEVLKNF 297


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 359 PISTVEGHHGQLVFGHIEGVSVVAMQGRFHY---YEGYPLWKCCLPVRV 496
           P++ +EG+  Q     I+  S +A   +  Y    + YP+WK C+  R+
Sbjct: 204 PLNGIEGYESQKQ--RIKPWSGIASMIQIDYEKRLQNYPIWKACIEERI 250


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 221 VEXANFLLSRISEKPNIGIICGSGMGSLAESIADGVRIPYEDIPNF 358
           V+  N  L+ +SEKP    I  SG+G  + S+A+   +P  +I  F
Sbjct: 6   VQYDNIYLN-LSEKPGKLRIAPSGLGWKSPSLAEPFTLPISEIRRF 50


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 386 HDDPPLCLWESLEYLR-MVFLPRLLYFLLVN 297
           H D  +C+  S+ +L  +V +PR LYFLL +
Sbjct: 188 HKDAIICMMLSVIWLFCLVAIPRFLYFLLAS 218


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 203 YSYETLVEXANFLLSRISEKPN-IGIICGSGMGSLAESIA 319
           Y Y T +  A F++  +   PN I I+    M +LA +++
Sbjct: 128 YIYNTQISAAQFIIDMVKANPNEITIVAAGPMTNLAIALS 167


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 548 LNPNYKIGDLMIVRDHINMMGF 613
           +NPNY  G  + V DH+ + G+
Sbjct: 189 VNPNYITGSSLAVYDHVRIDGY 210


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 342 SYGILTPSAILSASEPIPEPQMMP 271
           S  +  P+A ++ +EP P+PQ +P
Sbjct: 210 STAVKAPTATVAENEPYPKPQSVP 233


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = -1

Query: 463 ISFVVMKTALHSNDGHSFYVTENKLTMMTLHCAYGK----VWNIF---VWYSYPVCYTFC 305
           I FV+   +L   + + F  ++   T MTL    G+    + N+F    W+  PVCY  C
Sbjct: 159 IGFVLFVASLKKGN-YKFQFSQFCWTHMTLLLVVGQSHFMINNLFEGLFWFFVPVCYVVC 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,039
Number of Sequences: 5004
Number of extensions: 58480
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)