Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C16
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091...    29   4.1  
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821...    29   5.4  
06_03_1336 - 29424470-29424897,29425243-29429653                       28   7.2  
04_04_0582 + 26369537-26369914,26371598-26371887,26371985-263721...    28   7.2  
10_08_0489 + 18269824-18270270,18271659-18271948,18272341-182725...    28   9.5  
10_08_0007 + 14044844-14045767                                         28   9.5  

>01_06_1312 -
           36205549-36206649,36207558-36207883,36209083-36209198,
           36210472-36211577
          Length = 882

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 354 FGISSYGILTPSAILSASEPIPEPQMMPMF 265
           FGI S  ++TP A+L      P+P ++PMF
Sbjct: 754 FGIISLLMVTPIALLLRPFADPDPDLLPMF 783


>10_08_0883 +
           21279913-21280235,21281066-21281327,21281998-21282199,
           21282289-21282436,21282541-21283084
          Length = 492

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 93  WSWHLSTLTLSWXKIVWXXXXXXXXXXLIVMEMXKLDILM 212
           WSW +  L LSW K  W          +I+ME+    +++
Sbjct: 292 WSWPILPLGLSWHKQRWDDLGYAAEMPVILMEILMYAVII 331


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +2

Query: 239  LLSRISEKPNIGIICGSGMG-SLAESIADG--VRIPYEDIPNFPISTVEGHHGQLVFGHI 409
            LLS +S   N+GI CG   G  L   +A G   R+     P F +         LV   I
Sbjct: 1287 LLSNLSSLTNLGIECGDLRGEDLCSLLAQGQLTRLRVNKNPKFFVGINPSSLQHLVTDDI 1346

Query: 410  EGVSVV 427
             GV VV
Sbjct: 1347 AGVLVV 1352


>04_04_0582 +
           26369537-26369914,26371598-26371887,26371985-26372156,
           26372271-26372393,26372499-26372627,26372785-26372979,
           26373128-26373214,26373296-26373568,26374166-26374273,
           26374363-26374686
          Length = 692

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +2

Query: 203 YSYETLVEXANFLLSRISEKPNIGIICGSGMGSLAESIADGVRIPYEDIP----NFPIST 370
           Y+  T+VE     ++ +     +GII G+G+  +   ++   R+PY DIP     +P+  
Sbjct: 518 YASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSGYFRLPY-DIPKPVWRYPMQY 576

Query: 371 VEGHHGQL 394
           +  H+  L
Sbjct: 577 ISFHYWAL 584


>10_08_0489 +
           18269824-18270270,18271659-18271948,18272341-18272512,
           18272608-18272730,18272832-18272960,18273061-18273255,
           18273384-18273470,18273563-18273835,18274047-18274154,
           18274769-18275116
          Length = 723

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +2

Query: 203 YSYETLVEXANFLLSRISEKPNIGIICGSGMGSLAESIADGVRIPYEDIP----NFPIST 370
           Y+  T+VE     ++ +     +GII G+G+  +   ++   R+P+ DIP     +P+S 
Sbjct: 541 YASVTVVESLMMAIASVIPNFLMGIIIGAGIQGIFMLVSGYFRLPH-DIPKPFWRYPMSY 599

Query: 371 VEGHHGQL 394
           +  H+  L
Sbjct: 600 ISFHYWAL 607


>10_08_0007 + 14044844-14045767
          Length = 307

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 378 PSTVLMGKFGISSYG-ILTPSAILSASEPIPEPQMMPMFGFSDILDSKKFAXSTNV 214
           P T   GKF I     +LTPSA+ S  +  P  ++    G + + D   F   T+V
Sbjct: 71  PPTPTNGKFNIFWQNTVLTPSAVASIKQSNPNVRVAVSMGGATVNDRPVFFNITSV 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,510,620
Number of Sequences: 37544
Number of extensions: 386759
Number of successful extensions: 923
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)