Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C16
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045645-1|AAC02605.1|  301|Caenorhabditis elegans Hypothetical ...   159   3e-39
AF106584-6|AAC78220.1|  424|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AF045645-1|AAC02605.1|  301|Caenorhabditis elegans Hypothetical
           protein K02D7.1 protein.
          Length = 301

 Score =  159 bits (385), Expect = 3e-39
 Identities = 79/190 (41%), Positives = 119/190 (62%), Gaps = 4/190 (2%)
 Frame = +2

Query: 206 SYETLVEXANFLLSRISE---KPNIGIICGSGMGSLAESIADGVRIPYEDIPNFPISTVE 376
           +Y+ ++  A  +  ++ E   + ++GIICGSG+G + +++ D   +PY  IP FP + V 
Sbjct: 21  NYDDVLSVAASIREQVGEDVARADLGIICGSGLGPIGDTVQDATILPYSKIPGFPTTHVV 80

Query: 377 GHHGQLVFGHIEGVSVVAMQGRFHYYE-GYPLWKCCLPVRVMKLLGVKILIATNAAGGLN 553
           GH G ++FG + G  VV +QGRFH YE    L  C LPVRVM  LG+KI+I +NAAGG+N
Sbjct: 81  GHKGNMIFGKLGGKKVVCLQGRFHPYEHNMDLALCTLPVRVMHQLGIKIMIVSNAAGGIN 140

Query: 554 PNYKIGDLMIVRDHINMMGFAGNNPLHGPNDERFGPXFPPMNKAYNYEFXKIAKEVAKEL 733
              + GDLM+++DHI +   AG +PL G ND RFG  F  ++ AY+ +  ++A +V +  
Sbjct: 141 AVLRHGDLMLIKDHIFLPALAGFSPLVGCNDPRFGARFVSVHDAYDKQLRQLAIDVGR-- 198

Query: 734 NIDHIVREGV 763
             D  + EGV
Sbjct: 199 RSDMTLYEGV 208


>AF106584-6|AAC78220.1|  424|Caenorhabditis elegans Hypothetical
           protein F54A5.1 protein.
          Length = 424

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
 Frame = -2

Query: 378 PSTVLMGKFGISSYGILTPSAILSASEPIPEPQMMPMFGFSDILDS--KKFAXSTNVS*E 205
           P T +     +S++ +  PSAI+SA+     P  +P      +  S  + FA +  +  +
Sbjct: 334 PETAISPSPAVSTFEVSRPSAIISATSSTTSPISIPATIIPSVSPSALELFAMAQQLGVQ 393

Query: 204 YPV-------FXFPLQSXPIXGSTCCVTK 139
            PV         FP Q  P  G+   + K
Sbjct: 394 LPVPFPTLPTHFFPFQMAPFYGNPASILK 422


>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
           protein C04A11.3 protein.
          Length = 1228

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 418 HSFYVTENKLTMMTLHCAYGKVWNIFV 338
           +S Y  ENKLTM+   C  G V NI V
Sbjct: 97  YSTYFFENKLTMLLEFCGGGAVDNIIV 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,485,194
Number of Sequences: 27780
Number of extensions: 330836
Number of successful extensions: 868
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)