Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C15
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    82   6e-17
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    79   3e-16
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    77   2e-15
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.63 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.9  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   5.9  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   7.8  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 81.8 bits (193), Expect = 6e-17
 Identities = 35/69 (50%), Positives = 52/69 (75%)
 Frame = +3

Query: 96  MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
           M+Y         GGK +P+A+D+E  LS+VGIEA+ E+++ +I ELNGKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 276 KLSSMPVGG 302
           KL+++P GG
Sbjct: 61  KLATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 79.4 bits (187), Expect = 3e-16
 Identities = 35/69 (50%), Positives = 52/69 (75%)
 Frame = +3

Query: 96  MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
           M+Y         GGK +P+A+D+E  LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 276 KLSSMPVGG 302
           KLS++P  G
Sbjct: 61  KLSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 33/69 (47%), Positives = 52/69 (75%)
 Frame = +3

Query: 96  MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
           M+Y         GGK +P+A+D+E  LS+VGIE++ E+++ +I EL+GKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 276 KLSSMPVGG 302
           KL+++P GG
Sbjct: 61  KLATVPSGG 69


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
 Frame = -3

Query: 301 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSPSASIPTELRXFSTSAAAGVX 140
           PPTG   S S P         + STS+P+    T  + + S  +PT     STS      
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTT----STSCTTSTS 177

Query: 139 LPPSTASKXAAT 104
           +PP+  S   +T
Sbjct: 178 IPPTGGSSSLST 189



 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 268 PAAISCSTSLPLSSVITFLSFSPSASIPTELRXFSTSAAAGVXLPPSTASKXAAT 104
           P   + STS+P+    T  + + S+ +PT     STS      +PP+  S    T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302



 Score = 25.0 bits (52), Expect = 7.8
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = -3

Query: 301 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSPSASIPTELRXFSTSAAAGVX 140
           PPTG   S S P         + STS+P+    T  + + S+ +PT     STS      
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234

Query: 139 LPPSTAS 119
           +P   +S
Sbjct: 235 IPTGGSS 241


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -3

Query: 298 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSPSASIPTELRXFSTSAAAGVXLPPS 128
           PT    S+   +++  S+S P SS    +T  S S S+   T     STS++       S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261

Query: 127 TASKXAAT 104
           TAS  +++
Sbjct: 262 TASSSSSS 269


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -3

Query: 232 SSVITFLSFSPSASIP--TELRXFSTSAAAGVXLPPSTASKXAAT 104
           SSV T LS S S+SIP  +     STS ++   +P S++S  +++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 280 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRXFSTSAAAGVXLPPSTA 122
           SF  P+A +   S P+SS+ +F + S +++ P+     + S  A    P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 430 TKLYKSTRRWSLFQFMF 480
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 247 TSLPLSSVITFLSFSPSASIPTELRXFSTSAAAGVXLPPSTASKXAAT 104
           T LP ++V T  SFS SAS  T     +++    +  PPST+     T
Sbjct: 37  TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,304
Number of Sequences: 5004
Number of extensions: 21575
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)